Wall clock time and date at job start Mon Mar 30 2020 01:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46985 * 110.99952 * 2 1 4 4 C 1.53095 * 109.45077 * 179.38152 * 3 2 1 5 5 C 1.53238 * 109.19476 * 59.72282 * 4 3 2 6 6 C 1.53337 * 108.82045 * 302.31313 * 5 4 3 7 7 N 1.36889 * 111.00174 * 236.43206 * 2 1 3 8 8 C 1.36944 * 120.49509 * 0.27221 * 7 2 1 9 9 H 1.07992 * 119.99988 * 30.26193 * 8 7 2 10 10 C 1.38817 * 119.99851 * 210.27058 * 8 7 2 11 11 N 1.31614 * 120.00293 * 15.08161 * 10 8 7 12 12 Si 1.86800 * 119.99732 * 195.08729 * 10 8 7 13 13 H 1.48505 * 109.47257 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47310 * 119.99818 * 12 10 8 15 15 H 1.48503 * 109.46920 * 239.99873 * 12 10 8 16 16 H 1.09007 * 109.46932 * 57.21531 * 1 2 3 17 17 H 1.08996 * 109.46973 * 177.20882 * 1 2 3 18 18 H 1.08996 * 109.47195 * 297.21611 * 1 2 3 19 19 H 1.09000 * 109.47911 * 299.37729 * 3 2 1 20 20 H 1.09006 * 109.47528 * 59.38325 * 3 2 1 21 21 H 1.08998 * 109.51781 * 179.65042 * 4 3 2 22 22 H 1.09003 * 109.51155 * 299.81351 * 4 3 2 23 23 H 1.08998 * 109.57588 * 182.51028 * 5 4 3 24 24 H 1.09002 * 109.68690 * 62.17367 * 5 4 3 25 25 H 1.09006 * 109.61710 * 292.04122 * 6 5 4 26 26 H 1.09003 * 109.76896 * 171.59353 * 6 5 4 27 27 H 0.96999 * 120.00161 * 174.98120 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3722 0.0000 4 6 3.5261 1.3309 0.0156 5 6 4.0226 0.5831 -1.2264 6 6 3.4143 -0.8245 -1.2324 7 7 1.9597 -0.7066 -1.0648 8 6 1.1071 -1.2945 -1.9609 9 1 0.1409 -0.8535 -2.1562 10 6 1.4849 -2.4575 -2.6180 11 7 2.5099 -3.1575 -2.1802 12 14 0.5385 -3.0288 -4.1238 13 1 -0.5621 -2.0734 -4.4087 14 1 1.4551 -3.0909 -5.2905 15 1 -0.0303 -4.3767 -3.8689 16 1 -0.3633 0.5565 -0.8640 17 1 -0.3633 -1.0264 -0.0500 18 1 -0.3633 0.4700 0.9139 19 1 1.6554 1.8922 -0.8955 20 1 1.6374 1.8991 0.8844 21 1 3.9180 2.3480 0.0093 22 1 3.8672 0.8139 0.9125 23 1 5.1098 0.5111 -1.1990 24 1 3.7143 1.1179 -2.1247 25 1 3.8313 -1.4069 -0.4107 26 1 3.6350 -1.3175 -2.1791 27 1 2.7292 -4.0069 -2.5940 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039095634.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:27 Heat of formation + Delta-G solvation = 33.768988 kcal Electronic energy + Delta-G solvation = -10487.175072 eV Core-core repulsion = 8666.939336 eV Total energy + Delta-G solvation = -1820.235735 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.86634 -35.01854 -34.49658 -31.90684 -28.12998 -27.46650 -24.47379 -23.30835 -20.75105 -18.51437 -17.48472 -16.44210 -15.97836 -15.34956 -15.15329 -14.51050 -14.13180 -13.83422 -13.05366 -12.80122 -12.69456 -12.62999 -12.45638 -12.04100 -11.63983 -11.35239 -11.32745 -10.67940 -10.02844 -8.17016 -7.94356 -5.31571 1.43847 1.45020 1.55836 2.40527 3.05725 3.23275 4.08014 4.13263 4.25076 4.37809 4.60212 4.71626 4.79301 4.85682 5.02836 5.09550 5.13324 5.24287 5.31821 5.56839 5.62435 5.72956 6.11243 6.49393 7.18483 8.01390 8.64590 9.18910 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060127 B = 0.018426 C = 0.015593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.566907 B = 1519.244975 C = 1795.195804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.318 5.318 3 C 0.020 3.980 4 C -0.102 4.102 5 C -0.140 4.140 6 C 0.196 3.804 7 N -0.477 5.477 8 C -0.276 4.276 9 H 0.067 0.933 10 C -0.042 4.042 11 N -0.932 5.932 12 Si 0.974 3.026 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.287 1.287 16 H 0.014 0.986 17 H 0.053 0.947 18 H 0.091 0.909 19 H 0.011 0.989 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.000 1.000 26 H 0.058 0.942 27 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 7.497 1.995 7.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.130 5.130 3 C -0.109 4.109 4 C -0.140 4.140 5 C -0.180 4.180 6 C 0.070 3.930 7 N -0.291 5.291 8 C -0.406 4.406 9 H 0.085 0.915 10 C -0.240 4.240 11 N -0.577 5.577 12 Si 0.801 3.199 13 H -0.194 1.194 14 H -0.213 1.213 15 H -0.214 1.214 16 H 0.032 0.968 17 H 0.071 0.929 18 H 0.109 0.891 19 H 0.029 0.971 20 H 0.109 0.891 21 H 0.104 0.896 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.064 0.936 25 H 0.018 0.982 26 H 0.076 0.924 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.010 7.172 2.352 7.548 hybrid contribution -0.738 -0.249 -1.479 1.671 sum -0.748 6.923 0.873 7.018 Atomic orbital electron populations 1.22398 0.87841 1.01225 0.99985 1.64249 1.07306 1.09997 1.31449 1.22841 0.96996 0.91303 0.99735 1.21458 0.94332 1.00517 0.97694 1.22138 1.00223 0.97480 0.98110 1.20603 0.80268 0.93255 0.98917 1.43909 1.02189 1.57689 1.25314 1.19538 1.00409 1.05220 1.15475 0.91518 1.25815 0.99493 0.95896 1.02760 1.70148 1.30882 1.13518 1.43200 0.85114 0.77968 0.77763 0.79020 1.19356 1.21282 1.21358 0.96759 0.92856 0.89104 0.97066 0.89073 0.89647 0.91998 0.90460 0.93569 0.98214 0.92393 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.41 8.47 127.69 1.08 2.49 15 2 N -0.32 -14.69 5.40 -536.75 -2.90 -17.59 15 3 C 0.02 0.77 5.66 86.32 0.49 1.25 15 4 C -0.10 -3.51 6.09 30.71 0.19 -3.32 15 5 C -0.14 -5.53 6.18 30.79 0.19 -5.34 15 6 C 0.20 9.99 5.42 86.42 0.47 10.46 15 7 N -0.48 -25.56 3.25 -342.01 -1.11 -26.67 15 8 C -0.28 -15.63 8.20 84.03 0.69 -14.94 15 9 H 0.07 3.71 6.28 -2.91 -0.02 3.69 15 10 C -0.04 -2.41 4.94 84.86 0.42 -1.99 15 11 N -0.93 -55.99 11.22 21.65 0.24 -55.75 15 12 Si 0.97 45.31 29.58 68.60 2.03 47.34 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 14 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 15 H -0.29 -13.20 7.11 99.48 0.71 -12.50 15 16 H 0.01 0.58 7.40 -2.38 -0.02 0.56 15 17 H 0.05 2.41 7.35 -2.39 -0.02 2.39 15 18 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 19 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 20 H 0.09 2.82 8.14 -2.38 -0.02 2.80 15 21 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 15 26 H 0.06 3.27 6.14 -2.39 -0.01 3.26 15 27 H 0.25 14.59 8.32 -92.71 -0.77 13.81 15 Total: -1.00 -64.51 216.37 2.91 -61.60 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.13 Total: 2.47 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 3.52 Total: -11.40 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -3.77 Total: -100.02 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.51 2.91 -61.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039095634.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.372 kcal (2) G-P(sol) polarization free energy of solvation -64.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds