Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48503 * 109.47043 * 270.00099 * 3 2 1 5 5 H 1.48500 * 109.47189 * 29.99785 * 3 2 1 6 6 H 1.48503 * 109.47295 * 150.00119 * 3 2 1 7 7 C 1.40206 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.39749 * 120.00002 * 0.02562 * 7 2 1 10 10 N 1.31758 * 125.30431 * 180.02562 * 9 7 2 11 11 C 1.30501 * 117.08801 * 179.97438 * 10 9 7 12 12 O 1.35874 * 122.32246 * 179.97438 * 11 10 9 13 13 C 1.36875 * 115.35104 * 0.24499 * 11 10 9 14 14 S 1.76113 * 125.30627 * 359.97176 * 9 7 2 15 15 H 0.97001 * 119.99823 * 359.97438 * 1 2 3 16 16 H 0.96700 * 114.00141 * 90.02498 * 12 11 10 17 17 H 1.08004 * 125.92623 * 179.71488 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0463 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4401 0.7000 7 6 2.0082 -1.2142 0.0005 8 1 3.0882 -1.2143 0.0010 9 6 1.3094 -2.4245 0.0005 10 7 1.8599 -3.6216 0.0015 11 6 1.0525 -4.6469 0.0019 12 8 1.5052 -5.9280 0.0023 13 6 -0.2818 -4.3421 -0.0041 14 16 -0.4441 -2.5873 0.0006 15 1 -0.4850 0.8401 0.0004 16 1 1.6359 -6.2987 0.8858 17 1 -1.0944 -5.0536 -0.0092 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039134734.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = -48.232284 kcal Electronic energy + Delta-G solvation = -7695.538210 eV Core-core repulsion = 5945.114652 eV Total energy + Delta-G solvation = -1750.423558 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.00389 -37.20916 -35.73741 -30.72708 -28.18914 -24.53312 -21.33060 -19.75247 -18.46586 -17.35460 -16.99356 -15.98473 -15.09888 -14.21291 -14.02061 -13.78933 -12.90419 -12.84698 -12.42392 -11.97556 -11.44645 -11.34332 -9.87613 -9.81690 -9.18698 -8.96155 -6.85458 0.46396 1.40899 1.41697 1.47573 1.60770 1.82220 2.13373 2.17211 3.01019 3.44517 4.73792 4.87802 5.00343 5.43076 5.83901 6.18080 6.28981 6.95327 7.65747 7.93074 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.097524 B = 0.016230 C = 0.014000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.040362 B = 1724.822853 C = 1999.491277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.019 3.981 3 Si 1.026 2.974 4 H -0.255 1.255 5 H -0.254 1.254 6 H -0.252 1.252 7 C -0.383 4.383 8 H 0.110 0.890 9 C 0.191 3.809 10 N -0.662 5.662 11 C 0.283 3.717 12 O -0.490 6.490 13 C -0.482 4.482 14 S 0.070 5.930 15 H 0.317 0.683 16 H 0.401 0.599 17 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 4.125 1.738 4.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.202 4.202 3 Si 0.842 3.158 4 H -0.179 1.179 5 H -0.178 1.178 6 H -0.176 1.176 7 C -0.426 4.426 8 H 0.127 0.873 9 C -0.059 4.059 10 N -0.395 5.395 11 C 0.104 3.896 12 O -0.298 6.298 13 C -0.627 4.627 14 S 0.324 5.676 15 H 0.131 0.869 16 H 0.257 0.743 17 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.434 4.890 1.137 5.039 hybrid contribution 0.383 -0.961 0.449 1.128 sum -0.051 3.929 1.586 4.237 Atomic orbital electron populations 1.68780 1.09293 1.33285 1.30124 1.27375 0.95968 1.05835 0.91051 0.84521 0.78556 0.72487 0.80217 1.17924 1.17808 1.17580 1.19526 0.96575 0.88050 1.38433 0.87262 1.23838 0.92367 0.93703 0.95972 1.66425 1.37944 0.98390 1.36708 1.18501 0.87263 0.84570 0.99299 1.84675 1.88494 1.22176 1.34461 1.27099 0.98646 1.02614 1.34311 1.84901 1.10705 0.95659 1.76324 0.86929 0.74266 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.26 10.63 21.87 0.23 -36.03 13 2 C 0.02 0.87 5.50 85.34 0.47 1.34 13 3 Si 1.03 32.66 29.56 68.60 2.03 34.69 13 4 H -0.26 -7.83 7.11 99.48 0.71 -7.12 13 5 H -0.25 -7.41 7.11 99.48 0.71 -6.70 13 6 H -0.25 -7.90 7.11 99.48 0.71 -7.20 13 7 C -0.38 -19.82 9.44 23.11 0.22 -19.60 13 8 H 0.11 5.42 7.85 -2.91 -0.02 5.39 13 9 C 0.19 10.83 7.13 85.07 0.61 11.44 13 10 N -0.66 -38.48 10.60 -308.67 -3.27 -41.76 13 11 C 0.28 15.24 7.83 84.57 0.66 15.90 13 12 O -0.49 -22.45 13.63 -92.13 -1.26 -23.71 13 13 C -0.48 -25.04 11.45 67.50 0.77 -24.27 13 14 S 0.07 3.70 20.36 -56.49 -1.15 2.55 13 15 H 0.32 12.59 8.29 -92.71 -0.77 11.82 13 16 H 0.40 13.59 9.06 -74.06 -0.67 12.92 13 17 H 0.15 7.07 8.06 -2.91 -0.02 7.04 13 Total: -1.00 -63.24 180.71 -0.05 -63.30 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.63 Total: 16.15 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 2.73 Total: -15.19 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -3.04 Total: -77.78 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.26 Total: -23.71 kcal Atomic # 14 Polarization: 32.66 SS G_CDS: 2.03 Total: 34.69 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.15 Total: 2.55 kcal Total: -63.24 -0.05 -63.30 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039134734.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.063 kcal (2) G-P(sol) polarization free energy of solvation -63.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds