Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48504 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47279 * 299.99548 * 3 2 1 6 6 H 1.48504 * 109.46966 * 59.99854 * 3 2 1 7 7 C 1.37870 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00088 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46999 * 179.97438 * 9 7 2 11 11 C 1.48720 * 111.01831 * 74.48981 * 10 9 7 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 H 1.09009 * 110.32136 * 241.05045 * 13 12 11 15 15 N 1.46894 * 110.32531 * 118.94736 * 13 12 11 16 16 C 1.48567 * 110.99718 * 189.99963 * 10 9 7 17 17 H 0.97003 * 119.99847 * 0.02562 * 1 2 3 18 18 H 1.08997 * 109.47211 * 59.99408 * 9 7 2 19 19 H 1.08999 * 109.46541 * 299.99598 * 9 7 2 20 20 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 21 21 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 22 22 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 23 23 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 24 24 H 1.00903 * 111.00385 * 61.45445 * 15 13 12 25 25 H 1.00904 * 110.99830 * 185.40317 * 15 13 12 26 26 H 1.08999 * 110.41133 * 82.17552 * 16 10 9 27 27 H 1.09001 * 110.41003 * 319.73948 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.8345 -3.7798 1.3382 12 6 3.3497 -5.2351 1.3477 13 6 2.4824 -5.9766 0.3097 14 1 1.9254 -6.7823 0.7881 15 7 3.3233 -6.5100 -0.7702 16 6 1.5135 -4.9080 -0.2403 17 1 -0.4850 0.8401 -0.0004 18 1 0.6247 -2.5571 -0.8896 19 1 0.6241 -2.5566 0.8903 20 1 2.0954 -3.6332 2.1259 21 1 3.6633 -3.0823 1.4588 22 1 3.2185 -5.6768 2.3355 23 1 4.3994 -5.2669 1.0559 24 1 3.9919 -7.1759 -0.4126 25 1 2.7588 -6.9204 -1.4989 26 1 1.3482 -5.0576 -1.3073 27 1 0.5672 -4.9387 0.2997 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050243939.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = -23.355453 kcal Electronic energy + Delta-G solvation = -9935.894431 eV Core-core repulsion = 8113.181594 eV Total energy + Delta-G solvation = -1822.712837 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.78098 -35.62640 -34.13577 -31.22398 -29.23454 -27.38187 -24.42538 -21.84766 -21.09118 -18.51034 -17.13045 -16.78503 -16.19646 -16.03685 -15.13794 -14.79033 -14.21643 -13.66703 -13.29353 -12.90679 -12.54125 -12.49080 -12.20526 -12.03139 -11.89624 -11.78752 -11.26856 -10.63383 -9.48666 -9.12453 -8.22796 -6.33570 1.39750 1.40891 1.55309 2.39833 3.09142 3.40853 3.68587 3.74258 3.89180 4.36823 4.41431 4.69908 4.77172 4.87471 4.90473 5.04913 5.06111 5.19689 5.32632 5.62838 5.99675 6.23213 6.38555 6.55012 6.74557 6.82682 7.36671 8.88879 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.087193 B = 0.011277 C = 0.010783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.049737 B = 2482.344681 C = 2596.077065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.196 3.804 10 N -0.515 5.515 11 C 0.042 3.958 12 C -0.109 4.109 13 C 0.097 3.903 14 H 0.060 0.940 15 N -0.843 5.843 16 C 0.032 3.968 17 H 0.265 0.735 18 H -0.001 1.001 19 H -0.034 1.034 20 H 0.023 0.977 21 H 0.063 0.937 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.351 0.649 25 H 0.347 0.653 26 H 0.072 0.928 27 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -10.809 2.117 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.069 3.931 10 N -0.239 5.239 11 C -0.086 4.086 12 C -0.147 4.147 13 C -0.015 4.015 14 H 0.078 0.922 15 N -0.377 5.377 16 C -0.097 4.097 17 H 0.074 0.926 18 H 0.017 0.983 19 H -0.017 1.017 20 H 0.041 0.959 21 H 0.082 0.918 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.166 0.834 25 H 0.161 0.839 26 H 0.090 0.910 27 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.658 -9.824 1.604 11.450 hybrid contribution -1.194 0.033 0.760 1.416 sum 4.464 -9.791 2.364 11.018 Atomic orbital electron populations 1.70098 1.07782 1.27955 1.51862 1.25975 0.95831 1.03395 0.94633 0.85263 0.78831 0.78173 0.77911 1.18857 1.20149 1.20065 1.21469 0.93533 0.91194 1.50064 0.92315 1.19552 0.90346 0.89866 0.93344 1.65370 1.28708 1.02338 1.27495 1.22964 0.98145 0.97660 0.89870 1.22399 1.00536 0.93018 0.98774 1.21956 0.92923 0.94885 0.91695 0.92204 1.58590 1.21275 1.44479 1.13319 1.23187 0.95160 0.90621 1.00759 0.92577 0.98259 1.01657 0.95867 0.91841 0.89361 0.90046 0.83436 0.83914 0.91005 0.95244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.15 13.29 21.45 0.28 -57.87 15 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 15 3 Si 0.97 45.76 29.54 68.60 2.03 47.78 15 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 7 C -0.52 -31.52 8.97 25.60 0.23 -31.29 15 8 H 0.06 3.51 7.81 -2.91 -0.02 3.48 15 9 C 0.20 11.15 4.59 85.56 0.39 11.54 15 10 N -0.51 -24.20 5.32 -885.58 -4.72 -28.91 15 11 C 0.04 1.70 6.13 86.42 0.53 2.23 15 12 C -0.11 -3.20 6.77 31.49 0.21 -2.99 15 13 C 0.10 2.75 4.18 45.81 0.19 2.94 15 14 H 0.06 1.40 8.14 -2.38 -0.02 1.38 15 15 N -0.84 -20.76 9.16 -164.98 -1.51 -22.27 15 16 C 0.03 1.19 6.17 86.45 0.53 1.73 15 17 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 18 H 0.00 -0.04 8.08 -2.39 -0.02 -0.06 15 19 H -0.03 -2.08 7.77 -2.39 -0.02 -2.10 15 20 H 0.02 0.97 7.76 -2.38 -0.02 0.95 15 21 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.08 2.31 7.95 -2.39 -0.02 2.30 15 24 H 0.35 6.61 9.06 -89.69 -0.81 5.80 15 25 H 0.35 7.42 8.98 -89.69 -0.81 6.62 15 26 H 0.07 2.70 7.99 -2.39 -0.02 2.68 15 27 H 0.03 1.13 8.00 -2.39 -0.02 1.11 15 Total: -1.00 -68.25 227.04 -1.82 -70.08 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -0.46 Total: 6.59 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 2.55 Total: -15.41 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -5.94 Total: -109.05 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.25 -1.82 -70.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050243939.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.724 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds