Wall clock time and date at job start Mon Mar 30 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00099 * 3 2 1 5 5 H 1.48494 * 109.46800 * 210.00147 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99849 * 3 2 1 7 7 C 1.38635 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99955 * 359.97438 * 7 2 1 9 9 O 1.34924 * 119.99732 * 180.02562 * 7 2 1 10 10 C 1.42903 * 116.99456 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.33432 * 55.79530 * 11 10 9 13 13 C 1.54910 * 110.37578 * 178.17322 * 11 10 9 14 14 C 1.55136 * 101.65207 * 155.90071 * 13 11 10 15 15 C 1.54319 * 103.02039 * 324.34335 * 14 13 11 16 16 N 1.47435 * 107.23277 * 22.28494 * 15 14 13 17 17 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47467 * 299.99597 * 10 9 7 19 19 H 1.08998 * 109.47526 * 59.99870 * 10 9 7 20 20 H 1.09004 * 110.98250 * 273.99149 * 13 11 10 21 21 H 1.08997 * 110.98969 * 37.80621 * 13 11 10 22 22 H 1.09009 * 110.70396 * 205.96091 * 14 13 11 23 23 H 1.08998 * 110.86176 * 82.79750 * 14 13 11 24 24 H 1.09005 * 109.88524 * 262.88307 * 15 14 13 25 25 H 1.08997 * 109.88867 * 141.69470 * 15 14 13 26 26 H 1.00901 * 111.00213 * 123.25463 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0465 1.4001 5 1 3.5473 1.4402 -0.7001 6 1 1.4473 2.6527 -0.7001 7 6 2.0091 -1.2006 0.0005 8 1 1.4691 -2.1359 0.0014 9 8 3.3583 -1.2005 0.0011 10 6 4.0070 -2.4738 0.0010 11 6 5.5239 -2.2734 0.0010 12 1 5.8241 -1.6541 0.8463 13 6 6.2487 -3.6416 0.0473 14 6 7.6237 -3.2891 -0.5789 15 6 7.2585 -2.2438 -1.6538 16 7 5.9616 -1.6570 -1.2696 17 1 -0.4850 0.8401 0.0004 18 1 3.7139 -3.0310 0.8908 19 1 3.7145 -3.0307 -0.8891 20 1 6.3645 -3.9874 1.0745 21 1 5.7235 -4.3823 -0.5556 22 1 8.0763 -4.1694 -1.0354 23 1 8.2908 -2.8576 0.1673 24 1 7.1730 -2.7271 -2.6271 25 1 8.0214 -1.4662 -1.6891 26 1 6.0306 -0.6544 -1.1801 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051816478.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:36 Heat of formation + Delta-G solvation = -38.183792 kcal Electronic energy + Delta-G solvation = -9980.146851 eV Core-core repulsion = 8059.072346 eV Total energy + Delta-G solvation = -1921.074504 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.38489 -35.99840 -31.82544 -29.93077 -29.84798 -25.16666 -23.15420 -20.87052 -19.84371 -17.44289 -16.63093 -15.40651 -15.05962 -14.05591 -13.73340 -13.08702 -12.64384 -12.26220 -12.03151 -11.69835 -11.26015 -11.14524 -10.78206 -10.64465 -10.48073 -9.90236 -9.46663 -9.18394 -8.05753 -8.03179 -5.90233 -3.55948 3.48063 3.50076 3.68106 4.47656 4.64835 4.75119 4.86496 5.11708 5.34851 5.43113 5.54445 5.74113 5.81093 5.95271 5.99259 6.03703 6.30397 6.47014 6.47828 6.72323 7.29526 7.75123 8.02237 8.46518 9.50442 10.08552 11.23106 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078754 B = 0.012136 C = 0.011030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.450379 B = 2306.645663 C = 2537.896300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.040 3.960 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.293 1.293 7 C -0.350 4.350 8 H 0.076 0.924 9 O -0.331 6.331 10 C 0.099 3.901 11 C 0.079 3.921 12 H 0.053 0.947 13 C -0.122 4.122 14 C -0.142 4.142 15 C 0.046 3.954 16 N -0.673 5.673 17 H 0.267 0.733 18 H 0.029 0.971 19 H 0.036 0.964 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.229 -4.503 -0.455 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.156 4.156 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.188 1.188 6 H -0.219 1.219 7 C -0.428 4.428 8 H 0.094 0.906 9 O -0.247 6.247 10 C 0.021 3.979 11 C -0.030 4.030 12 H 0.071 0.929 13 C -0.160 4.160 14 C -0.181 4.181 15 C -0.084 4.084 16 N -0.304 5.304 17 H 0.077 0.923 18 H 0.047 0.953 19 H 0.055 0.945 20 H 0.091 0.909 21 H 0.095 0.905 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.832 -4.635 -0.890 14.615 hybrid contribution 0.759 0.986 0.647 1.402 sum 14.590 -3.649 -0.243 15.042 Atomic orbital electron populations 1.69699 1.05351 1.27009 1.54358 1.24313 0.94850 0.98193 0.98263 0.86119 0.80093 0.82270 0.77837 1.21085 1.18823 1.21919 1.20386 0.78743 0.94963 1.48711 0.90593 1.85184 1.20200 1.25375 1.93940 1.22008 0.89476 0.87913 0.98520 1.22427 0.95478 0.94261 0.90844 0.92893 1.22655 0.95129 0.97222 1.01015 1.22781 0.97401 0.99429 0.98452 1.22608 0.90456 0.96566 0.98740 1.61665 1.26486 1.10031 1.32176 0.92291 0.95288 0.94541 0.90911 0.90499 0.91056 0.91755 0.91157 0.93646 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.35 13.97 55.48 0.77 -28.58 15 2 C 0.04 1.23 5.49 -17.51 -0.10 1.14 15 3 Si 0.91 23.91 28.62 -169.99 -4.86 19.04 15 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 15 5 H -0.26 -6.86 7.11 56.52 0.40 -6.45 15 6 H -0.29 -7.51 7.11 56.52 0.40 -7.11 15 7 C -0.35 -10.73 10.35 30.88 0.32 -10.41 15 8 H 0.08 2.43 8.00 -52.49 -0.42 2.01 15 9 O -0.33 -9.06 8.59 -16.49 -0.14 -9.20 15 10 C 0.10 2.17 5.70 37.16 0.21 2.38 15 11 C 0.08 1.40 3.55 -66.18 -0.24 1.16 15 12 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 13 C -0.12 -1.66 6.50 -24.59 -0.16 -1.82 15 14 C -0.14 -1.65 6.94 -24.91 -0.17 -1.83 15 15 C 0.05 0.61 7.58 -2.84 -0.02 0.58 15 16 N -0.67 -11.70 7.03 -103.84 -0.73 -12.43 15 17 H 0.27 7.98 8.31 -40.82 -0.34 7.64 15 18 H 0.03 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.08 1.06 8.06 -51.93 -0.42 0.64 15 22 H 0.07 0.71 8.14 -51.92 -0.42 0.28 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 15 26 H 0.34 6.01 8.91 -39.29 -0.35 5.66 15 LS Contribution 224.05 15.07 3.38 3.38 Total: -1.00 -32.98 224.05 -5.44 -38.43 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.71 Total: -1.85 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.15 Total: -8.79 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.04 Total: -41.01 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.14 Total: -9.20 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.86 Total: 19.04 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -32.98 -5.44 -38.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051816478.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.244 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds