Wall clock time and date at job start Mon Mar 30 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86803 * 119.99894 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00099 * 3 2 1 5 5 H 1.48494 * 109.46800 * 210.00147 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99849 * 3 2 1 7 7 C 1.38635 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99955 * 359.97438 * 7 2 1 9 9 O 1.34924 * 119.99732 * 180.02562 * 7 2 1 10 10 C 1.42903 * 116.99456 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46926 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.33432 * 55.79530 * 11 10 9 13 13 C 1.54910 * 110.37578 * 178.17322 * 11 10 9 14 14 C 1.55136 * 101.65207 * 155.90071 * 13 11 10 15 15 C 1.54319 * 103.02039 * 324.34335 * 14 13 11 16 16 N 1.47435 * 107.23277 * 22.28494 * 15 14 13 17 17 H 0.97001 * 119.99805 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47467 * 299.99597 * 10 9 7 19 19 H 1.08998 * 109.47526 * 59.99870 * 10 9 7 20 20 H 1.09004 * 110.98250 * 273.99149 * 13 11 10 21 21 H 1.08997 * 110.98969 * 37.80621 * 13 11 10 22 22 H 1.09009 * 110.70396 * 205.96091 * 14 13 11 23 23 H 1.08998 * 110.86176 * 82.79750 * 14 13 11 24 24 H 1.09005 * 109.88524 * 262.88307 * 15 14 13 25 25 H 1.08997 * 109.88867 * 141.69470 * 15 14 13 26 26 H 1.00901 * 111.00213 * 123.25463 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0465 1.4001 5 1 3.5473 1.4402 -0.7001 6 1 1.4473 2.6527 -0.7001 7 6 2.0091 -1.2006 0.0005 8 1 1.4691 -2.1359 0.0014 9 8 3.3583 -1.2005 0.0011 10 6 4.0070 -2.4738 0.0010 11 6 5.5239 -2.2734 0.0010 12 1 5.8241 -1.6541 0.8463 13 6 6.2487 -3.6416 0.0473 14 6 7.6237 -3.2891 -0.5789 15 6 7.2585 -2.2438 -1.6538 16 7 5.9616 -1.6570 -1.2696 17 1 -0.4850 0.8401 0.0004 18 1 3.7139 -3.0310 0.8908 19 1 3.7145 -3.0307 -0.8891 20 1 6.3645 -3.9874 1.0745 21 1 5.7235 -4.3823 -0.5556 22 1 8.0763 -4.1694 -1.0354 23 1 8.2908 -2.8576 0.1673 24 1 7.1730 -2.7271 -2.6271 25 1 8.0214 -1.4662 -1.6891 26 1 6.0306 -0.6544 -1.1801 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051816478.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:36 Heat of formation + Delta-G solvation = -63.271400 kcal Electronic energy + Delta-G solvation = -9981.234731 eV Core-core repulsion = 8059.072346 eV Total energy + Delta-G solvation = -1922.162385 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.71140 -37.95193 -34.13102 -31.32685 -31.06025 -27.06315 -25.04719 -21.90148 -21.26717 -19.68914 -17.91791 -17.46991 -16.41098 -15.71940 -15.59477 -14.62890 -14.27937 -14.10867 -13.63398 -13.08352 -12.79238 -12.69508 -12.14386 -12.03623 -11.89401 -11.61875 -11.46891 -11.42284 -10.34967 -9.31068 -8.26501 -5.96204 1.38098 1.42801 1.62185 2.45739 3.05279 3.24679 3.33701 3.78352 4.05185 4.12869 4.28211 4.52773 4.68226 4.69279 4.82142 4.86965 4.95675 5.06276 5.14439 5.35245 5.58098 6.05532 6.15381 6.46847 7.12608 7.83924 8.89822 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.078754 B = 0.012136 C = 0.011030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.450379 B = 2306.645663 C = 2537.896300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.018 4.018 3 Si 0.982 3.018 4 H -0.272 1.272 5 H -0.260 1.260 6 H -0.281 1.281 7 C -0.359 4.359 8 H 0.043 0.957 9 O -0.342 6.342 10 C 0.090 3.910 11 C 0.081 3.919 12 H 0.054 0.946 13 C -0.118 4.118 14 C -0.131 4.131 15 C 0.043 3.957 16 N -0.699 5.699 17 H 0.274 0.726 18 H 0.033 0.967 19 H 0.023 0.977 20 H 0.092 0.908 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.538 -4.062 -0.335 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.210 4.210 3 Si 0.806 3.194 4 H -0.198 1.198 5 H -0.184 1.184 6 H -0.206 1.206 7 C -0.437 4.437 8 H 0.061 0.939 9 O -0.258 6.258 10 C 0.013 3.987 11 C -0.029 4.029 12 H 0.072 0.928 13 C -0.156 4.156 14 C -0.169 4.169 15 C -0.086 4.086 16 N -0.330 5.330 17 H 0.083 0.917 18 H 0.051 0.949 19 H 0.042 0.958 20 H 0.110 0.890 21 H 0.091 0.909 22 H 0.113 0.887 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.157 -4.223 -0.773 16.718 hybrid contribution 0.016 0.736 0.585 0.940 sum 16.173 -3.487 -0.188 16.546 Atomic orbital electron populations 1.69814 1.07039 1.28452 1.55132 1.25267 0.95851 1.02193 0.97729 0.85022 0.78658 0.77273 0.78488 1.19798 1.18378 1.20644 1.20383 0.80330 0.94078 1.48929 0.93865 1.85134 1.18222 1.28424 1.94021 1.22362 0.92362 0.85964 0.98000 1.22390 0.92260 0.96942 0.91269 0.92771 1.22672 0.95772 0.94637 1.02491 1.22770 0.96273 0.99813 0.98091 1.22714 0.89052 0.97538 0.99289 1.61589 1.29355 1.10009 1.32000 0.91720 0.94879 0.95843 0.88984 0.90943 0.88732 0.90209 0.91049 0.91726 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.98 13.97 21.61 0.30 -61.68 15 2 C -0.02 -1.11 5.49 84.82 0.47 -0.65 15 3 Si 0.98 49.11 28.62 68.60 1.96 51.07 15 4 H -0.27 -13.03 7.11 99.48 0.71 -12.32 15 5 H -0.26 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 15 7 C -0.36 -22.51 10.35 67.91 0.70 -21.80 15 8 H 0.04 2.90 8.00 -2.91 -0.02 2.88 15 9 O -0.34 -18.82 8.59 -81.93 -0.70 -19.52 15 10 C 0.09 4.00 5.70 71.98 0.41 4.41 15 11 C 0.08 2.75 3.55 45.39 0.16 2.91 15 12 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 13 C -0.12 -2.90 6.50 31.98 0.21 -2.69 15 14 C -0.13 -2.55 6.94 31.77 0.22 -2.33 15 15 C 0.04 1.01 7.58 86.65 0.66 1.67 15 16 N -0.70 -23.26 7.03 -482.45 -3.39 -26.65 15 17 H 0.27 16.41 8.31 -92.71 -0.77 15.64 15 18 H 0.03 1.42 8.14 -2.39 -0.02 1.40 15 19 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 20 H 0.09 1.92 8.14 -2.38 -0.02 1.90 15 21 H 0.07 1.85 8.06 -2.39 -0.02 1.83 15 22 H 0.09 1.45 8.14 -2.38 -0.02 1.43 15 23 H 0.08 1.34 8.14 -2.39 -0.02 1.33 15 24 H 0.07 1.67 8.14 -2.38 -0.02 1.65 15 25 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.34 11.43 8.91 -89.69 -0.80 10.64 15 Total: -1.00 -70.78 224.05 1.35 -69.43 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.35 Total: 5.83 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 2.83 Total: -18.49 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -3.09 Total: -88.33 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.70 Total: -19.52 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.96 Total: 51.07 kcal Total: -70.78 1.35 -69.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051816478.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.162 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds