Wall clock time and date at job start Mon Mar 30 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86798 * 119.99635 * 2 1 4 4 H 1.48500 * 109.46850 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47566 * 300.00161 * 3 2 1 6 6 H 1.48500 * 109.47143 * 60.00406 * 3 2 1 7 7 C 1.38636 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99969 * 180.02562 * 7 2 1 9 9 O 1.34928 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.42903 * 116.99484 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.36465 * 307.34476 * 11 10 9 13 13 C 1.54378 * 110.40835 * 185.00224 * 11 10 9 14 14 C 1.54263 * 105.05773 * 217.36660 * 13 11 10 15 15 C 1.54375 * 105.06244 * 359.97438 * 14 13 11 16 16 N 1.48555 * 110.41530 * 69.82703 * 11 10 9 17 17 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47382 * 59.99786 * 10 9 7 19 19 H 1.09001 * 109.46938 * 299.99773 * 10 9 7 20 20 H 1.09003 * 110.32534 * 336.25941 * 13 11 10 21 21 H 1.08998 * 110.32988 * 98.36703 * 13 11 10 22 22 H 1.09004 * 110.32127 * 118.89550 * 14 13 11 23 23 H 1.09003 * 110.32548 * 240.99772 * 14 13 11 24 24 H 1.08995 * 110.41619 * 142.63021 * 15 14 13 25 25 H 1.09003 * 110.41459 * 265.07778 * 15 14 13 26 26 H 1.00902 * 111.00018 * 277.82066 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3966 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0016 10 6 2.1128 -3.5675 -0.0015 11 6 1.1808 -4.7809 -0.0034 12 1 0.4572 -4.7047 0.8082 13 6 1.9958 -6.0859 0.1228 14 6 1.2688 -7.1015 -0.7827 15 6 0.0755 -6.3249 -1.3792 16 7 0.4859 -4.8985 -1.3111 17 1 -0.4850 0.8400 -0.0004 18 1 2.7410 -3.5928 0.8889 19 1 2.7423 -3.5919 -0.8911 20 1 3.0165 -5.9301 -0.2265 21 1 1.9987 -6.4321 1.1563 22 1 1.9328 -7.4442 -1.5763 23 1 0.9150 -7.9481 -0.1941 24 1 -0.0928 -6.6226 -2.4141 25 1 -0.8224 -6.4916 -0.7840 26 1 -0.3174 -4.2890 -1.3499 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051816479.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:38 Heat of formation + Delta-G solvation = -39.157274 kcal Electronic energy + Delta-G solvation = -9925.185383 eV Core-core repulsion = 8004.068665 eV Total energy + Delta-G solvation = -1921.116718 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.19705 -35.75356 -31.71536 -29.85340 -29.54837 -24.95815 -23.40759 -20.69363 -19.73047 -17.40543 -16.28409 -15.43016 -14.62571 -14.26396 -13.83991 -12.79628 -12.63334 -12.16206 -11.74143 -11.46415 -11.16142 -11.07308 -10.88494 -10.58275 -10.26649 -10.00837 -9.44335 -9.08854 -8.06371 -7.88647 -5.88967 -3.51164 3.34889 3.38054 3.42649 4.36088 4.67117 4.94397 5.08030 5.31297 5.44617 5.49739 5.70404 5.93564 5.98710 6.02223 6.21423 6.22824 6.35874 6.55111 6.76246 6.78291 7.31419 7.54694 7.86693 8.49847 9.55137 10.25499 11.32781 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.108625 B = 0.010189 C = 0.009649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.705270 B = 2747.419214 C = 2901.121996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.020 3.980 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.354 4.354 8 H 0.061 0.939 9 O -0.297 6.297 10 C 0.086 3.914 11 C 0.073 3.927 12 H 0.051 0.949 13 C -0.119 4.119 14 C -0.122 4.122 15 C 0.032 3.968 16 N -0.656 5.656 17 H 0.256 0.744 18 H 0.023 0.977 19 H 0.032 0.968 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 -10.518 -0.402 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.752 3.248 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.433 4.433 8 H 0.079 0.921 9 O -0.212 6.212 10 C 0.008 3.992 11 C -0.037 4.037 12 H 0.069 0.931 13 C -0.157 4.157 14 C -0.160 4.160 15 C -0.098 4.098 16 N -0.286 5.286 17 H 0.066 0.934 18 H 0.041 0.959 19 H 0.050 0.950 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.457 -10.439 -0.849 10.758 hybrid contribution -0.074 0.777 0.669 1.028 sum 2.383 -9.662 -0.180 9.953 Atomic orbital electron populations 1.70027 1.05384 1.25631 1.52491 1.24936 0.95657 0.97678 0.99435 0.85900 0.78824 0.82448 0.77634 1.19968 1.20918 1.20997 1.20849 0.90174 0.82812 1.49503 0.92091 1.85589 1.31884 1.10436 1.93256 1.22080 0.92756 0.86474 0.97907 1.22423 0.96094 0.94163 0.91003 0.93108 1.22267 0.99861 0.94332 0.99252 1.22262 0.97324 0.97504 0.98942 1.22900 0.96030 0.90519 1.00334 1.63621 1.29053 1.03613 1.32303 0.93406 0.95899 0.95035 0.91096 0.91627 0.91383 0.91892 0.90725 0.94782 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.54 13.67 55.48 0.76 -27.78 15 2 C 0.02 0.62 5.49 -17.51 -0.10 0.52 15 3 Si 0.92 22.63 29.55 -169.99 -5.02 17.61 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.35 -10.78 9.89 30.88 0.31 -10.47 15 8 H 0.06 1.76 7.77 -52.49 -0.41 1.35 15 9 O -0.30 -8.77 9.78 -16.51 -0.16 -8.93 15 10 C 0.09 2.00 5.58 37.16 0.21 2.21 15 11 C 0.07 1.41 3.44 -66.07 -0.23 1.19 15 12 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 13 C -0.12 -1.78 6.55 -25.35 -0.17 -1.95 15 14 C -0.12 -1.59 7.00 -25.35 -0.18 -1.77 15 15 C 0.03 0.46 7.47 -2.17 -0.02 0.45 15 16 N -0.66 -12.39 7.29 -102.74 -0.75 -13.14 15 17 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 18 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 19 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.07 1.05 7.86 -51.93 -0.41 0.64 15 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 15 26 H 0.35 6.97 8.92 -39.29 -0.35 6.62 15 LS Contribution 225.03 15.07 3.39 3.39 Total: -1.00 -33.30 225.03 -5.64 -38.93 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.68 Total: -0.25 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.17 Total: -9.83 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.01 Total: -40.93 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.16 Total: -8.93 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -33.30 -5.64 -38.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051816479.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.222 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds