Wall clock time and date at job start Mon Mar 30 2020 02:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86798 * 119.99635 * 2 1 4 4 H 1.48500 * 109.46850 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47566 * 300.00161 * 3 2 1 6 6 H 1.48500 * 109.47143 * 60.00406 * 3 2 1 7 7 C 1.38636 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99969 * 180.02562 * 7 2 1 9 9 O 1.34928 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.42903 * 116.99484 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46726 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.36465 * 307.34476 * 11 10 9 13 13 C 1.54378 * 110.40835 * 185.00224 * 11 10 9 14 14 C 1.54263 * 105.05773 * 217.36660 * 13 11 10 15 15 C 1.54375 * 105.06244 * 359.97438 * 14 13 11 16 16 N 1.48555 * 110.41530 * 69.82703 * 11 10 9 17 17 H 0.96996 * 120.00124 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47382 * 59.99786 * 10 9 7 19 19 H 1.09001 * 109.46938 * 299.99773 * 10 9 7 20 20 H 1.09003 * 110.32534 * 336.25941 * 13 11 10 21 21 H 1.08998 * 110.32988 * 98.36703 * 13 11 10 22 22 H 1.09004 * 110.32127 * 118.89550 * 14 13 11 23 23 H 1.09003 * 110.32548 * 240.99772 * 14 13 11 24 24 H 1.08995 * 110.41619 * 142.63021 * 15 14 13 25 25 H 1.09003 * 110.41459 * 265.07778 * 15 14 13 26 26 H 1.00902 * 111.00018 * 277.82066 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3464 0.0006 5 1 1.8910 2.3966 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3344 -2.3691 -0.0016 10 6 2.1128 -3.5675 -0.0015 11 6 1.1808 -4.7809 -0.0034 12 1 0.4572 -4.7047 0.8082 13 6 1.9958 -6.0859 0.1228 14 6 1.2688 -7.1015 -0.7827 15 6 0.0755 -6.3249 -1.3792 16 7 0.4859 -4.8985 -1.3111 17 1 -0.4850 0.8400 -0.0004 18 1 2.7410 -3.5928 0.8889 19 1 2.7423 -3.5919 -0.8911 20 1 3.0165 -5.9301 -0.2265 21 1 1.9987 -6.4321 1.1563 22 1 1.9328 -7.4442 -1.5763 23 1 0.9150 -7.9481 -0.1941 24 1 -0.0928 -6.6226 -2.4141 25 1 -0.8224 -6.4916 -0.7840 26 1 -0.3174 -4.2890 -1.3499 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051816479.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:38 Heat of formation + Delta-G solvation = -64.747748 kcal Electronic energy + Delta-G solvation = -9926.295069 eV Core-core repulsion = 8004.068665 eV Total energy + Delta-G solvation = -1922.226404 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.64176 -37.77709 -33.94232 -31.15756 -31.09091 -26.99698 -25.24821 -21.92188 -21.19858 -19.58508 -17.75315 -17.34899 -16.18919 -15.91916 -15.78537 -14.56975 -14.23705 -13.64850 -13.51484 -12.95566 -12.83510 -12.68350 -12.28865 -12.15414 -11.85410 -11.50991 -11.39090 -11.22285 -10.14594 -9.50928 -8.18059 -5.87157 1.39455 1.45541 1.56371 2.33504 3.14194 3.32813 3.53366 3.85681 4.06584 4.18570 4.33970 4.58416 4.68067 4.73003 4.80594 4.92787 4.96996 5.05458 5.21717 5.23537 5.27498 5.93418 6.21239 6.33274 7.24990 8.06264 9.07290 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.108625 B = 0.010189 C = 0.009649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.705270 B = 2747.419214 C = 2901.121996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.007 2.993 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.379 4.379 8 H 0.069 0.931 9 O -0.334 6.334 10 C 0.081 3.919 11 C 0.072 3.928 12 H 0.037 0.963 13 C -0.113 4.113 14 C -0.115 4.115 15 C 0.029 3.971 16 N -0.676 5.676 17 H 0.261 0.739 18 H 0.031 0.969 19 H 0.025 0.975 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 -11.139 -0.371 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.235 4.235 3 Si 0.830 3.170 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.457 4.457 8 H 0.087 0.913 9 O -0.250 6.250 10 C 0.004 3.996 11 C -0.038 4.038 12 H 0.055 0.945 13 C -0.151 4.151 14 C -0.153 4.153 15 C -0.100 4.100 16 N -0.305 5.305 17 H 0.069 0.931 18 H 0.049 0.951 19 H 0.043 0.957 20 H 0.090 0.910 21 H 0.105 0.895 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.474 -11.104 -0.819 11.663 hybrid contribution -0.397 0.889 0.645 1.168 sum 3.076 -10.215 -0.174 10.669 Atomic orbital electron populations 1.70197 1.07564 1.27136 1.53573 1.26236 0.96803 1.02002 0.98498 0.84671 0.77970 0.76385 0.78023 1.18207 1.20063 1.19944 1.21371 0.90800 0.83766 1.49809 0.91323 1.85540 1.34083 1.11854 1.93476 1.22362 0.93602 0.85920 0.97742 1.22434 0.95890 0.94540 0.90953 0.94517 1.22280 0.99291 0.92336 1.01220 1.22292 0.96450 0.97408 0.99120 1.23059 0.97233 0.87977 1.01701 1.63625 1.28908 1.06051 1.31964 0.93074 0.95126 0.95693 0.90957 0.89536 0.90212 0.89000 0.89310 0.93850 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.27 13.67 21.61 0.30 -60.98 15 2 C -0.04 -2.59 5.49 84.82 0.47 -2.12 15 3 Si 1.01 46.36 29.55 68.60 2.03 48.39 15 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 7 C -0.38 -23.41 9.89 67.91 0.67 -22.74 15 8 H 0.07 3.98 7.77 -2.91 -0.02 3.96 15 9 O -0.33 -20.32 9.78 -81.98 -0.80 -21.12 15 10 C 0.08 3.85 5.58 71.98 0.40 4.25 15 11 C 0.07 2.78 3.44 45.06 0.15 2.93 15 12 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 13 C -0.11 -3.15 6.55 31.49 0.21 -2.94 15 14 C -0.11 -2.62 7.00 31.49 0.22 -2.40 15 15 C 0.03 0.79 7.47 86.44 0.65 1.44 15 16 N -0.68 -25.58 7.29 -478.95 -3.49 -29.07 15 17 H 0.26 15.71 8.31 -92.71 -0.77 14.94 15 18 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 19 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.07 1.99 7.86 -2.39 -0.02 1.97 15 21 H 0.09 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 15 26 H 0.33 13.83 8.92 -89.69 -0.80 13.03 15 Total: -1.00 -72.37 225.03 1.15 -71.22 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.35 Total: 13.14 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 2.77 Total: -21.59 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -3.19 Total: -90.04 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.80 Total: -21.12 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -72.37 1.15 -71.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051816479.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.475 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds