Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47466 * 300.00700 * 3 2 1 6 6 H 1.48505 * 109.47050 * 60.00533 * 3 2 1 7 7 C 1.37881 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99553 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47240 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47577 * 179.97438 * 10 9 7 12 12 C 1.42903 * 114.00064 * 180.02562 * 11 10 9 13 13 C 1.53515 * 114.17048 * 149.99853 * 12 11 10 14 14 N 1.47481 * 87.93334 * 87.61937 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.97007 * 119.99863 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47599 * 59.99883 * 9 7 2 18 18 H 1.09006 * 109.47374 * 299.99904 * 9 7 2 19 19 H 1.09008 * 109.47203 * 59.99434 * 10 9 7 20 20 H 1.09001 * 109.46928 * 300.00447 * 10 9 7 21 21 H 1.08997 * 113.38078 * 16.92108 * 12 11 10 22 22 H 1.09004 * 113.47747 * 332.85841 * 13 12 11 23 23 H 1.08995 * 113.53124 * 202.39902 * 13 12 11 24 24 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 25 25 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 26 26 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5306 -4.8996 0.0001 12 6 2.3705 -6.0558 0.0007 13 6 1.7587 -7.2768 0.7016 14 7 1.1338 -7.6355 -0.5852 15 6 2.2404 -6.9278 -1.2560 16 1 -0.4850 0.8401 0.0004 17 1 0.6239 -2.5567 -0.8902 18 1 0.6246 -2.5571 0.8897 19 1 2.8719 -3.6044 0.8895 20 1 2.8718 -3.6044 -0.8905 21 1 3.3991 -5.8430 0.2918 22 1 1.0377 -7.0166 1.4767 23 1 2.4998 -8.0004 1.0411 24 1 1.1885 -8.6297 -0.7490 25 1 3.1108 -7.5577 -1.4393 26 1 1.9278 -6.3719 -2.1399 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062809884.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = -18.482692 kcal Electronic energy + Delta-G solvation = -9694.076249 eV Core-core repulsion = 7773.856048 eV Total energy + Delta-G solvation = -1920.220200 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.53904 -36.07300 -33.08489 -29.84730 -26.64321 -25.73617 -24.45645 -20.88976 -19.71148 -17.06670 -16.53610 -15.67223 -14.83843 -14.50884 -13.88902 -13.44234 -12.86744 -12.50830 -12.14197 -11.34917 -11.10470 -10.89887 -10.55599 -10.47297 -10.16905 -9.48462 -9.17397 -8.90034 -8.82987 -8.34650 -6.01754 -4.05597 3.30890 3.37730 3.41609 3.94726 4.42177 4.58383 4.70393 5.04906 5.25305 5.34247 5.57435 5.69745 5.82030 5.98945 6.19790 6.27766 6.29707 6.88955 7.29179 7.58157 7.80958 7.84907 8.13441 8.37071 9.01298 9.58067 11.09958 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.124033 B = 0.008391 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 225.692910 B = 3336.125317 C = 3421.255798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.066 3.934 11 O -0.354 6.354 12 C 0.063 3.937 13 C -0.007 4.007 14 N -0.615 5.615 15 C -0.023 4.023 16 H 0.261 0.739 17 H 0.025 0.975 18 H 0.025 0.975 19 H 0.036 0.964 20 H 0.036 0.964 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.311 0.689 25 H 0.066 0.934 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -11.384 -0.016 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.010 4.010 11 O -0.273 6.273 12 C 0.004 3.996 13 C -0.137 4.137 14 N -0.239 5.239 15 C -0.154 4.154 16 H 0.071 0.929 17 H 0.044 0.956 18 H 0.043 0.957 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.092 0.908 22 H 0.110 0.890 23 H 0.088 0.912 24 H 0.123 0.877 25 H 0.085 0.915 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.913 -10.792 -0.116 11.858 hybrid contribution 1.559 0.289 0.064 1.587 sum 6.471 -10.503 -0.052 12.337 Atomic orbital electron populations 1.69998 1.06086 1.26656 1.50169 1.25001 0.94871 0.99307 0.95133 0.86468 0.79978 0.83485 0.77643 1.19712 1.20915 1.20914 1.21086 0.93021 0.90539 1.51555 0.92493 1.19077 0.94246 0.89358 0.98571 1.23013 0.96519 0.83243 0.98227 1.88031 1.32420 1.12907 1.93921 1.22996 0.94129 0.87444 0.95080 1.23929 0.98416 0.96089 0.95274 1.67402 1.38556 1.13261 1.04689 1.24185 0.93583 0.97302 1.00317 0.92885 0.95641 0.95690 0.94560 0.94584 0.90775 0.89001 0.91231 0.87747 0.91536 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 15 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.02 0.68 5.34 -27.88 -0.15 0.53 15 10 C 0.07 1.47 5.72 37.16 0.21 1.68 15 11 O -0.35 -7.56 10.39 -35.23 -0.37 -7.92 15 12 C 0.06 1.01 4.65 -26.20 -0.12 0.89 15 13 C -0.01 -0.09 8.46 -7.54 -0.06 -0.15 15 14 N -0.62 -8.81 8.71 -122.65 -1.07 -9.88 15 15 C -0.02 -0.32 8.46 -7.53 -0.06 -0.38 15 16 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 17 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 18 H 0.02 0.73 8.14 -51.93 -0.42 0.31 15 19 H 0.04 0.77 8.14 -51.92 -0.42 0.34 15 20 H 0.04 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.07 1.03 7.88 -51.93 -0.41 0.62 15 22 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.31 3.45 8.91 -39.29 -0.35 3.10 15 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 LS Contribution 228.44 15.07 3.44 3.44 Total: -1.00 -31.88 228.44 -6.56 -38.44 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.68 Total: -2.96 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.60 Total: -11.26 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.33 Total: -36.44 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.37 Total: -7.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.88 -6.56 -38.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062809884.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.956 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds