Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00242 * 2 1 4 4 H 1.48500 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47466 * 300.00700 * 3 2 1 6 6 H 1.48505 * 109.47050 * 60.00533 * 3 2 1 7 7 C 1.37881 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00414 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99553 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47240 * 180.02562 * 9 7 2 11 11 O 1.42894 * 109.47577 * 179.97438 * 10 9 7 12 12 C 1.42903 * 114.00064 * 180.02562 * 11 10 9 13 13 C 1.53515 * 114.17048 * 149.99853 * 12 11 10 14 14 N 1.47481 * 87.93334 * 87.61937 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.97007 * 119.99863 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.47599 * 59.99883 * 9 7 2 18 18 H 1.09006 * 109.47374 * 299.99904 * 9 7 2 19 19 H 1.09008 * 109.47203 * 59.99434 * 10 9 7 20 20 H 1.09001 * 109.46928 * 300.00447 * 10 9 7 21 21 H 1.08997 * 113.38078 * 16.92108 * 12 11 10 22 22 H 1.09004 * 113.47747 * 332.85841 * 13 12 11 23 23 H 1.08995 * 113.53124 * 202.39902 * 13 12 11 24 24 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 25 25 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 26 26 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5306 -4.8996 0.0001 12 6 2.3705 -6.0558 0.0007 13 6 1.7587 -7.2768 0.7016 14 7 1.1338 -7.6355 -0.5852 15 6 2.2404 -6.9278 -1.2560 16 1 -0.4850 0.8401 0.0004 17 1 0.6239 -2.5567 -0.8902 18 1 0.6246 -2.5571 0.8897 19 1 2.8719 -3.6044 0.8895 20 1 2.8718 -3.6044 -0.8905 21 1 3.3991 -5.8430 0.2918 22 1 1.0377 -7.0166 1.4767 23 1 2.4998 -8.0004 1.0411 24 1 1.1885 -8.6297 -0.7490 25 1 3.1108 -7.5577 -1.4393 26 1 1.9278 -6.3719 -2.1399 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062809884.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = -43.856167 kcal Electronic energy + Delta-G solvation = -9695.176525 eV Core-core repulsion = 7773.856048 eV Total energy + Delta-G solvation = -1921.320477 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.73159 -37.64265 -35.23334 -31.90470 -27.95667 -26.79464 -26.45528 -22.91156 -20.93718 -18.65873 -18.14253 -17.19363 -16.54463 -16.43400 -15.33069 -14.68199 -14.46604 -14.06471 -13.85552 -13.07031 -12.95392 -12.59376 -12.39339 -11.92042 -11.75884 -11.46224 -11.33653 -10.64750 -10.30704 -9.90692 -8.23843 -6.37686 1.41540 1.43063 1.56614 2.36869 2.70906 3.10092 3.39765 3.54518 4.00162 4.31795 4.35471 4.44383 4.53449 4.66436 4.77088 4.84727 4.94163 5.16309 5.37468 5.56087 5.73177 6.10810 6.36741 6.52831 6.78905 7.32563 8.89768 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.124033 B = 0.008391 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 225.692910 B = 3336.125317 C = 3421.255798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.026 3.974 10 C 0.084 3.916 11 O -0.388 6.388 12 C 0.037 3.963 13 C 0.005 3.995 14 N -0.646 5.646 15 C -0.013 4.013 16 H 0.266 0.734 17 H -0.010 1.010 18 H -0.008 1.008 19 H 0.051 0.949 20 H 0.047 0.953 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.330 0.670 25 H 0.109 0.891 26 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -11.848 0.061 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.011 4.011 10 C 0.008 3.992 11 O -0.307 6.307 12 C -0.022 4.022 13 C -0.126 4.126 14 N -0.272 5.272 15 C -0.143 4.143 16 H 0.075 0.925 17 H 0.009 0.991 18 H 0.010 0.990 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.116 0.884 22 H 0.092 0.908 23 H 0.132 0.868 24 H 0.143 0.857 25 H 0.127 0.873 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.026 -11.292 -0.041 13.299 hybrid contribution 0.858 0.319 0.036 0.916 sum 7.884 -10.973 -0.004 13.512 Atomic orbital electron populations 1.70150 1.08189 1.28064 1.50988 1.26096 0.95812 1.03842 0.94240 0.85211 0.79061 0.77760 0.77834 1.17992 1.20292 1.20226 1.21507 0.93813 0.91289 1.51644 0.91138 1.18952 0.94706 0.92176 0.95290 1.22578 0.94750 0.82502 0.99350 1.87958 1.34374 1.13934 1.94415 1.23451 0.94840 0.86280 0.97600 1.23948 0.98697 0.95583 0.94333 1.67333 1.39575 1.14992 1.05316 1.24163 0.94855 0.97027 0.98293 0.92538 0.99130 0.98968 0.93115 0.93446 0.88401 0.90832 0.86846 0.85655 0.87326 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.58 13.29 21.45 0.28 -58.29 15 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 15 3 Si 0.98 44.33 29.54 68.60 2.03 46.36 15 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 15 8 H 0.07 3.82 7.74 -2.92 -0.02 3.79 15 9 C 0.03 1.48 5.34 29.85 0.16 1.64 15 10 C 0.08 3.77 5.72 71.98 0.41 4.18 15 11 O -0.39 -16.62 10.39 -148.98 -1.55 -18.17 15 12 C 0.04 1.11 4.65 30.94 0.14 1.25 15 13 C 0.00 0.11 8.46 83.58 0.71 0.82 15 14 N -0.65 -17.30 8.71 -542.34 -4.73 -22.03 15 15 C -0.01 -0.33 8.46 83.58 0.71 0.38 15 16 H 0.27 15.47 8.31 -92.70 -0.77 14.70 15 17 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 18 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 15 19 H 0.05 2.10 8.14 -2.38 -0.02 2.08 15 20 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 21 H 0.10 2.43 7.88 -2.39 -0.02 2.41 15 22 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.33 6.48 8.91 -89.69 -0.80 5.68 15 25 H 0.11 1.83 8.14 -2.39 -0.02 1.82 15 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 Total: -1.00 -70.21 228.44 -0.78 -70.99 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.35 Total: 3.98 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 2.83 Total: -22.84 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -4.44 Total: -80.32 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.55 Total: -18.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -70.21 -0.78 -70.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062809884.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.139 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds