Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50699 * 109.46981 * 240.00450 * 2 1 3 5 5 H 1.08001 * 119.99943 * 239.99946 * 4 2 1 6 6 C 1.37876 * 120.00347 * 59.72359 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.27456 * 6 4 2 8 8 Si 1.86800 * 120.00340 * 180.27368 * 6 4 2 9 9 H 1.48496 * 109.46907 * 89.99908 * 8 6 4 10 10 H 1.48493 * 109.47348 * 210.00044 * 8 6 4 11 11 H 1.48499 * 109.46937 * 329.99897 * 8 6 4 12 12 N 1.46894 * 109.47483 * 120.00456 * 2 1 3 13 13 C 1.47482 * 110.99920 * 284.47349 * 12 2 1 14 14 C 1.53511 * 87.93369 * 221.29467 * 13 12 2 15 15 O 1.42896 * 114.16750 * 139.67065 * 14 13 12 16 16 C 1.47473 * 111.00203 * 188.50471 * 12 2 1 17 17 H 1.09007 * 109.46684 * 173.98811 * 1 2 3 18 18 H 1.08996 * 109.47294 * 293.98801 * 1 2 3 19 19 H 1.09003 * 109.46821 * 53.99019 * 1 2 3 20 20 H 0.96997 * 120.00415 * 180.02562 * 7 6 4 21 21 H 1.09005 * 113.47758 * 336.06585 * 13 12 2 22 22 H 1.09002 * 113.47545 * 106.52665 * 13 12 2 23 23 H 1.08997 * 114.16528 * 272.37787 * 14 13 12 24 24 H 0.96700 * 114.00341 * 86.16581 * 15 14 13 25 25 H 1.09001 * 113.47715 * 253.46436 * 16 12 2 26 26 H 1.08995 * 113.47769 * 23.87308 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6946 -0.2426 -2.4828 7 7 0.9384 0.8267 -2.6034 8 14 2.3109 -1.1275 -4.0080 9 1 1.3307 -2.1698 -4.4055 10 1 2.4720 -0.1515 -5.1155 11 1 3.6199 -1.7647 -3.7155 12 7 2.0198 -0.6925 1.1993 13 6 1.8715 0.1554 2.3968 14 6 3.2574 -0.3303 2.8441 15 8 4.0763 0.6887 3.4212 16 6 3.4797 -0.5384 1.3395 17 1 -0.3633 -1.0221 -0.1076 18 1 -0.3634 0.4178 0.9389 19 1 -0.3633 0.6042 -0.8313 20 1 0.7005 1.1557 -3.4843 21 1 1.8366 1.2215 2.1724 22 1 1.0654 -0.1635 3.0576 23 1 3.2410 -1.2527 3.4247 24 1 3.9343 0.8177 4.3690 25 1 4.0367 -1.4454 1.1043 26 1 3.8741 0.3419 0.8321 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070841074.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = -14.148476 kcal Electronic energy + Delta-G solvation = -10187.298224 eV Core-core repulsion = 8267.265969 eV Total energy + Delta-G solvation = -1920.032255 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.42498 -35.50455 -33.24851 -30.16612 -25.97921 -25.26606 -24.42452 -20.33930 -19.16273 -17.40323 -16.10726 -15.39009 -14.55637 -14.12103 -13.41407 -12.72169 -12.23378 -12.18500 -11.76750 -11.25459 -10.94737 -10.68719 -10.47107 -10.20432 -10.09503 -9.76515 -9.27592 -8.88564 -8.48167 -7.80622 -6.01987 -4.06779 3.31460 3.37359 3.41311 4.39455 4.48288 5.00908 5.07706 5.30117 5.45164 6.00436 6.16906 6.25531 6.45264 6.51307 6.65602 6.84569 7.04432 7.34012 7.43865 7.80650 7.90577 8.03491 8.25282 8.46554 8.98559 9.58144 11.05442 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070139 B = 0.013448 C = 0.012166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.109549 B = 2081.612474 C = 2300.942235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.181 3.819 3 H 0.008 0.992 4 C -0.506 4.506 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.464 5.464 13 C -0.031 4.031 14 C 0.059 3.941 15 O -0.562 6.562 16 C 0.028 3.972 17 H 0.035 0.965 18 H 0.006 0.994 19 H 0.082 0.918 20 H 0.261 0.739 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.371 0.629 25 H 0.078 0.922 26 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 -1.061 8.091 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 H 0.026 0.974 4 C -0.545 4.545 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.189 5.189 13 C -0.161 4.161 14 C 0.000 4.000 15 O -0.366 6.366 16 C -0.101 4.101 17 H 0.054 0.946 18 H 0.025 0.975 19 H 0.101 0.899 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.217 0.783 25 H 0.096 0.904 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.266 -1.551 7.251 7.753 hybrid contribution 0.257 0.372 -0.431 0.625 sum 2.524 -1.179 6.819 7.366 Atomic orbital electron populations 1.21700 0.97375 1.00484 0.98867 1.19807 0.93084 0.92518 0.87201 0.97438 1.21061 1.31166 1.12466 0.89759 0.92071 1.24944 0.95124 0.95045 0.99099 1.69904 1.36848 1.23017 1.23490 0.86482 0.79230 0.79308 0.82317 1.20616 1.21265 1.19887 1.68921 1.05790 1.40579 1.03623 1.24418 0.97286 0.98081 0.96332 1.23733 0.90675 0.90227 0.95355 1.86556 1.64755 1.58185 1.27078 1.23606 0.93486 1.01677 0.91377 0.94582 0.97499 0.89945 0.92937 0.91509 0.91051 0.89553 0.78299 0.90378 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.06 37.16 0.34 -2.87 15 2 C 0.18 4.75 1.66 -68.87 -0.11 4.64 15 3 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 15 4 C -0.51 -14.34 8.24 -34.44 -0.28 -14.63 15 5 H 0.06 1.74 7.74 -52.49 -0.41 1.33 15 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -26.00 11.38 55.43 0.63 -25.37 15 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 15 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 12 N -0.46 -10.52 6.12 -238.05 -1.46 -11.98 15 13 C -0.03 -0.59 6.84 -7.56 -0.05 -0.65 15 14 C 0.06 0.99 5.56 -26.20 -0.15 0.85 15 15 O -0.56 -8.69 13.71 -35.23 -0.48 -9.17 15 16 C 0.03 0.57 6.93 -7.56 -0.05 0.52 15 17 H 0.03 0.91 8.14 -51.93 -0.42 0.48 15 18 H 0.01 0.14 7.59 -51.93 -0.39 -0.26 15 19 H 0.08 2.25 6.25 -51.93 -0.32 1.93 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.07 1.33 7.68 -51.93 -0.40 0.93 15 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 24 H 0.37 3.70 9.12 45.56 0.42 4.11 15 25 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 26 H 0.07 1.62 7.79 -51.93 -0.40 1.22 15 LS Contribution 220.26 15.07 3.32 3.32 Total: -1.00 -30.61 220.26 -6.15 -36.76 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -2.73 Total: 0.28 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.41 Total: -10.55 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.83 Total: -37.35 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.48 Total: -9.17 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.61 -6.15 -36.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070841074.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.607 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds