Wall clock time and date at job start Mon Mar 30 2020 02:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50699 * 109.46981 * 240.00450 * 2 1 3 5 5 H 1.08001 * 119.99943 * 239.99946 * 4 2 1 6 6 C 1.37876 * 120.00347 * 59.72359 * 4 2 1 7 7 N 1.31517 * 119.99945 * 0.27456 * 6 4 2 8 8 Si 1.86800 * 120.00340 * 180.27368 * 6 4 2 9 9 H 1.48496 * 109.46907 * 89.99908 * 8 6 4 10 10 H 1.48493 * 109.47348 * 210.00044 * 8 6 4 11 11 H 1.48499 * 109.46937 * 329.99897 * 8 6 4 12 12 N 1.46894 * 109.47483 * 120.00456 * 2 1 3 13 13 C 1.47482 * 110.99920 * 284.47349 * 12 2 1 14 14 C 1.53511 * 87.93369 * 221.29467 * 13 12 2 15 15 O 1.42896 * 114.16750 * 139.67065 * 14 13 12 16 16 C 1.47473 * 111.00203 * 188.50471 * 12 2 1 17 17 H 1.09007 * 109.46684 * 173.98811 * 1 2 3 18 18 H 1.08996 * 109.47294 * 293.98801 * 1 2 3 19 19 H 1.09003 * 109.46821 * 53.99019 * 1 2 3 20 20 H 0.96997 * 120.00415 * 180.02562 * 7 6 4 21 21 H 1.09005 * 113.47758 * 336.06585 * 13 12 2 22 22 H 1.09002 * 113.47545 * 106.52665 * 13 12 2 23 23 H 1.08997 * 114.16528 * 272.37787 * 14 13 12 24 24 H 0.96700 * 114.00341 * 86.16581 * 15 14 13 25 25 H 1.09001 * 113.47715 * 253.46436 * 16 12 2 26 26 H 1.08995 * 113.47769 * 23.87308 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6946 -0.2426 -2.4828 7 7 0.9384 0.8267 -2.6034 8 14 2.3109 -1.1275 -4.0080 9 1 1.3307 -2.1698 -4.4055 10 1 2.4720 -0.1515 -5.1155 11 1 3.6199 -1.7647 -3.7155 12 7 2.0198 -0.6925 1.1993 13 6 1.8715 0.1554 2.3968 14 6 3.2574 -0.3303 2.8441 15 8 4.0763 0.6887 3.4212 16 6 3.4797 -0.5384 1.3395 17 1 -0.3633 -1.0221 -0.1076 18 1 -0.3634 0.4178 0.9389 19 1 -0.3633 0.6042 -0.8313 20 1 0.7005 1.1557 -3.4843 21 1 1.8366 1.2215 2.1724 22 1 1.0654 -0.1635 3.0576 23 1 3.2410 -1.2527 3.4247 24 1 3.9343 0.8177 4.3690 25 1 4.0367 -1.4454 1.1043 26 1 3.8741 0.3419 0.8321 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070841074.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:52 Heat of formation + Delta-G solvation = -39.706028 kcal Electronic energy + Delta-G solvation = -10188.406482 eV Core-core repulsion = 8267.265969 eV Total energy + Delta-G solvation = -1921.140513 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.01897 -36.95717 -35.22050 -32.16935 -27.85123 -27.00014 -26.26711 -22.19010 -20.76896 -18.92545 -18.07595 -17.13116 -16.31735 -15.76126 -15.22594 -14.53023 -14.00629 -13.76110 -13.43522 -13.17902 -12.84136 -12.56975 -12.33879 -12.08433 -12.07030 -11.44316 -10.90761 -10.72540 -10.59724 -9.66382 -8.17017 -6.30025 1.40027 1.40820 1.51639 2.39189 3.07439 3.16563 3.48380 3.62801 4.11358 4.50637 4.59684 4.70689 4.75549 4.78834 4.91692 4.96211 5.11770 5.36143 5.39368 5.64715 5.99529 6.20505 6.45712 6.81393 6.95978 7.39158 8.89732 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070139 B = 0.013448 C = 0.012166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.109549 B = 2081.612474 C = 2300.942235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.185 3.815 3 H -0.029 1.029 4 C -0.526 4.526 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.269 1.269 12 N -0.477 5.477 13 C -0.035 4.035 14 C 0.094 3.906 15 O -0.574 6.574 16 C 0.013 3.987 17 H 0.031 0.969 18 H 0.029 0.971 19 H 0.058 0.942 20 H 0.263 0.737 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.123 0.877 24 H 0.399 0.601 25 H 0.084 0.916 26 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -1.974 9.039 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H -0.011 1.011 4 C -0.565 4.565 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.201 5.201 13 C -0.164 4.164 14 C 0.034 3.966 15 O -0.382 6.382 16 C -0.116 4.116 17 H 0.050 0.950 18 H 0.048 0.952 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.115 0.885 23 H 0.140 0.860 24 H 0.249 0.751 25 H 0.102 0.898 26 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.679 -2.461 8.238 9.005 hybrid contribution 0.153 0.701 -0.648 0.967 sum 2.832 -1.760 7.590 8.290 Atomic orbital electron populations 1.21519 0.96920 0.99742 0.99090 1.19603 0.93427 0.90658 0.88594 1.01099 1.21333 1.31486 1.12530 0.91129 0.92725 1.25779 0.95202 0.95749 1.02132 1.70027 1.37569 1.24127 1.24281 0.85451 0.78862 0.78265 0.78449 1.19813 1.20657 1.19343 1.68816 1.07120 1.40845 1.03325 1.24501 1.00055 0.96766 0.95091 1.23432 0.88383 0.91535 0.93223 1.86496 1.64168 1.57825 1.29686 1.23658 0.92295 1.00791 0.94870 0.95022 0.95183 0.92319 0.92751 0.93167 0.88515 0.85960 0.75054 0.89773 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 9.06 71.98 0.65 -5.20 15 2 C 0.18 9.89 1.66 44.17 0.07 9.97 15 3 H -0.03 -1.70 7.56 -2.39 -0.02 -1.71 15 4 C -0.53 -30.26 8.24 25.60 0.21 -30.05 15 5 H 0.05 3.13 7.74 -2.91 -0.02 3.11 15 6 C 0.01 0.58 5.30 84.65 0.45 1.03 15 7 N -0.92 -54.39 11.38 21.45 0.24 -54.15 15 8 Si 0.96 44.66 29.54 68.60 2.03 46.69 15 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 12 N -0.48 -21.32 6.12 -907.44 -5.55 -26.87 15 13 C -0.03 -1.24 6.84 83.57 0.57 -0.67 15 14 C 0.09 2.86 5.56 30.94 0.17 3.03 15 15 O -0.57 -16.03 13.71 -148.98 -2.04 -18.07 15 16 C 0.01 0.53 6.93 83.57 0.58 1.11 15 17 H 0.03 1.59 8.14 -2.38 -0.02 1.57 15 18 H 0.03 1.33 7.59 -2.39 -0.02 1.32 15 19 H 0.06 3.26 6.25 -2.39 -0.01 3.25 15 20 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 21 H 0.05 1.98 7.68 -2.38 -0.02 1.96 15 22 H 0.10 2.98 8.14 -2.39 -0.02 2.96 15 23 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.40 6.35 9.12 -74.06 -0.68 5.68 15 25 H 0.08 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.04 2.01 7.79 -2.39 -0.02 1.99 15 Total: -1.00 -65.76 220.26 -2.13 -67.89 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.49 Total: 5.29 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 2.71 Total: -20.78 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -5.31 Total: -81.02 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -2.04 Total: -18.07 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.76 -2.13 -67.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070841074.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.182 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds