Wall clock time and date at job start Mon Mar 30 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46612 * 30.00338 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00041 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 C 1.52998 * 117.49852 * 248.75205 * 14 11 10 16 16 C 1.52995 * 117.49875 * 180.09136 * 14 11 10 17 17 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 18 18 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 19 19 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 20 20 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 21 21 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 22 22 H 1.08995 * 115.54610 * 34.41516 * 14 11 10 23 23 H 1.09001 * 117.49846 * 359.97438 * 15 14 11 24 24 H 1.08994 * 117.50309 * 145.02432 * 15 14 11 25 25 H 1.08997 * 117.49802 * 214.98515 * 16 14 11 26 26 H 1.09005 * 117.49788 * 359.97438 * 16 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 1 5.8652 -1.5461 -0.8446 13 8 5.9814 -1.5443 1.2182 14 6 6.3801 -3.5114 -0.1281 15 6 7.1799 -3.9833 1.0878 16 6 7.9084 -3.4441 -0.1458 17 1 -0.4850 0.8401 0.0004 18 1 3.8646 -0.3623 -0.0014 19 1 3.8482 -3.0428 -0.8909 20 1 3.8489 -3.0424 0.8892 21 1 5.7881 -2.0626 2.0114 22 1 5.9026 -4.2740 -0.7433 23 1 7.1623 -3.3533 1.9772 24 1 7.2292 -5.0563 1.2723 25 1 8.4366 -4.1627 -0.7724 26 1 8.3698 -2.4595 -0.0682 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070885268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:33 Heat of formation + Delta-G solvation = -16.185498 kcal Electronic energy + Delta-G solvation = -9890.943850 eV Core-core repulsion = 7970.823263 eV Total energy + Delta-G solvation = -1920.120587 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.68966 -35.19184 -34.07072 -31.36332 -28.40446 -23.99240 -22.45937 -21.35448 -20.34213 -17.68545 -16.61495 -15.59812 -14.89808 -14.48726 -13.66042 -13.42275 -12.68326 -12.24555 -12.07100 -11.51722 -11.25591 -10.92173 -10.82449 -10.44965 -10.12859 -10.01920 -9.61383 -9.38415 -8.87948 -7.20006 -5.74111 -3.09251 3.42994 3.49605 3.50312 3.79928 4.54870 4.64219 4.80027 4.98420 5.01029 5.34980 5.54122 5.63041 5.72124 5.80263 5.89895 5.98194 6.14125 6.20976 6.53110 6.70127 7.92276 8.03646 8.45008 9.25215 9.97651 10.18250 11.44229 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.086704 B = 0.011151 C = 0.010391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.861774 B = 2510.466165 C = 2693.908871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.132 3.868 11 C 0.123 3.877 12 H 0.100 0.900 13 O -0.558 6.558 14 C -0.183 4.183 15 C -0.179 4.179 16 C -0.174 4.174 17 H 0.259 0.741 18 H 0.365 0.635 19 H 0.034 0.966 20 H 0.028 0.972 21 H 0.371 0.629 22 H 0.110 0.890 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.018 -6.152 0.843 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.004 3.996 11 C 0.064 3.936 12 H 0.118 0.882 13 O -0.364 6.364 14 C -0.202 4.202 15 C -0.216 4.216 16 C -0.211 4.211 17 H 0.069 0.931 18 H 0.198 0.802 19 H 0.052 0.948 20 H 0.046 0.954 21 H 0.219 0.781 22 H 0.129 0.871 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.967 -5.766 0.435 15.117 hybrid contribution 0.276 0.644 0.301 0.763 sum 14.243 -5.122 0.736 15.154 Atomic orbital electron populations 1.69710 1.05143 1.25860 1.57616 1.24664 0.95240 0.97289 1.01910 0.86540 0.79525 0.84736 0.77862 1.21086 1.21729 1.19844 1.19070 0.80669 0.94733 1.43120 0.89336 1.42634 1.03929 1.02224 1.90991 1.21252 0.89296 0.89854 0.99215 1.21711 0.93400 0.91045 0.87427 0.88176 1.86554 1.85971 1.48175 1.15685 1.23122 0.93734 1.00505 1.02849 1.22929 1.04673 1.00911 0.93067 1.22898 0.94298 1.02692 1.01256 0.93071 0.80175 0.94824 0.95379 0.78055 0.87145 0.88319 0.89046 0.89211 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.05 13.97 55.49 0.78 -29.28 15 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 15 3 Si 0.88 22.92 27.73 -169.99 -4.71 18.21 15 4 H -0.28 -7.28 7.11 56.52 0.40 -6.88 15 5 H -0.29 -7.58 7.11 56.52 0.40 -7.17 15 6 H -0.27 -6.83 6.52 56.52 0.37 -6.46 15 7 C -0.25 -7.22 10.47 -15.06 -0.16 -7.38 15 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 15 9 N -0.75 -18.73 5.35 -59.91 -0.32 -19.05 15 10 C 0.13 2.60 5.88 -4.04 -0.02 2.58 15 11 C 0.12 1.99 3.36 -26.73 -0.09 1.90 15 12 H 0.10 1.67 8.14 -51.93 -0.42 1.25 15 13 O -0.56 -9.24 12.44 -35.23 -0.44 -9.68 15 14 C -0.18 -2.35 5.71 -90.62 -0.52 -2.87 15 15 C -0.18 -1.98 9.74 -26.69 -0.26 -2.24 15 16 C -0.17 -1.97 10.19 -26.70 -0.27 -2.24 15 17 H 0.26 7.91 8.31 -40.82 -0.34 7.57 15 18 H 0.37 9.08 5.53 -40.82 -0.23 8.85 15 19 H 0.03 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.03 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.37 5.10 7.56 45.56 0.34 5.45 15 22 H 0.11 1.35 8.11 -51.93 -0.42 0.93 15 23 H 0.10 1.07 6.37 -51.93 -0.33 0.74 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 26 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 223.88 15.07 3.37 3.37 Total: -1.00 -32.53 223.88 -5.50 -38.03 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.76 Total: 8.61 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.42 Total: -10.21 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.45 Total: -48.33 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.44 Total: -9.68 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.53 -5.50 -38.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070885268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.842 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds