Wall clock time and date at job start Mon Mar 30 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00622 * 2 1 4 4 H 1.48503 * 109.47086 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46612 * 30.00338 * 3 2 1 6 6 H 1.48497 * 109.46986 * 150.00041 * 3 2 1 7 7 C 1.38819 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99625 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00106 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 C 1.52998 * 117.49852 * 248.75205 * 14 11 10 16 16 C 1.52995 * 117.49875 * 180.09136 * 14 11 10 17 17 H 0.97005 * 119.99686 * 359.97438 * 1 2 3 18 18 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 19 19 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 20 20 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 21 21 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 22 22 H 1.08995 * 115.54610 * 34.41516 * 14 11 10 23 23 H 1.09001 * 117.49846 * 359.97438 * 15 14 11 24 24 H 1.08994 * 117.50309 * 145.02432 * 15 14 11 25 25 H 1.08997 * 117.49802 * 214.98515 * 16 14 11 26 26 H 1.09005 * 117.49788 * 359.97438 * 16 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2024 -0.0011 10 6 4.1119 -2.4711 -0.0011 11 6 5.6162 -2.1916 -0.0024 12 1 5.8652 -1.5461 -0.8446 13 8 5.9814 -1.5443 1.2182 14 6 6.3801 -3.5114 -0.1281 15 6 7.1799 -3.9833 1.0878 16 6 7.9084 -3.4441 -0.1458 17 1 -0.4850 0.8401 0.0004 18 1 3.8646 -0.3623 -0.0014 19 1 3.8482 -3.0428 -0.8909 20 1 3.8489 -3.0424 0.8892 21 1 5.7881 -2.0626 2.0114 22 1 5.9026 -4.2740 -0.7433 23 1 7.1623 -3.3533 1.9772 24 1 7.2292 -5.0563 1.2723 25 1 8.4366 -4.1627 -0.7724 26 1 8.3698 -2.4595 -0.0682 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070885268.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:33 Heat of formation + Delta-G solvation = -40.885169 kcal Electronic energy + Delta-G solvation = -9892.014908 eV Core-core repulsion = 7970.823263 eV Total energy + Delta-G solvation = -1921.191645 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.86587 -36.67969 -35.65593 -33.48729 -30.06019 -25.78747 -23.55401 -22.94741 -21.48794 -19.80166 -17.77889 -16.84061 -16.57138 -16.30540 -15.23250 -14.99097 -14.50280 -13.80423 -13.53663 -13.22826 -12.83963 -12.33616 -12.27897 -11.97899 -11.85995 -11.41798 -11.08228 -11.01991 -10.67736 -9.33630 -8.06118 -5.39458 1.37781 1.39807 1.48715 2.46548 2.87223 3.23453 3.33041 3.64443 3.93069 4.04154 4.06783 4.42297 4.44092 4.56891 4.81899 4.91614 5.05746 5.20958 5.27021 5.31526 5.70934 6.17999 6.78041 7.05012 7.81322 8.00496 9.15364 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.086704 B = 0.011151 C = 0.010391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.861774 B = 2510.466165 C = 2693.908871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.240 4.240 8 H 0.057 0.943 9 N -0.756 5.756 10 C 0.127 3.873 11 C 0.135 3.865 12 H 0.094 0.906 13 O -0.570 6.570 14 C -0.196 4.196 15 C -0.170 4.170 16 C -0.166 4.166 17 H 0.259 0.741 18 H 0.367 0.633 19 H 0.036 0.964 20 H 0.030 0.970 21 H 0.383 0.617 22 H 0.117 0.883 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.224 -6.166 0.988 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.371 4.371 8 H 0.075 0.925 9 N -0.402 5.402 10 C 0.000 4.000 11 C 0.076 3.924 12 H 0.112 0.888 13 O -0.377 6.377 14 C -0.215 4.215 15 C -0.207 4.207 16 C -0.203 4.203 17 H 0.068 0.932 18 H 0.200 0.800 19 H 0.053 0.947 20 H 0.048 0.952 21 H 0.233 0.767 22 H 0.135 0.865 23 H 0.119 0.881 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.217 -5.816 0.586 17.238 hybrid contribution -0.418 0.534 0.268 0.729 sum 15.799 -5.282 0.854 16.680 Atomic orbital electron populations 1.69880 1.07070 1.26818 1.59526 1.25498 0.96130 1.01254 1.02403 0.85393 0.78530 0.79581 0.78222 1.20221 1.21856 1.18139 1.19081 0.82726 0.93597 1.41701 0.92462 1.42664 1.02452 1.04213 1.90892 1.21489 0.91627 0.87743 0.99126 1.21497 0.90922 0.92746 0.87244 0.88788 1.86524 1.85833 1.49051 1.16322 1.22941 0.94599 0.99015 1.04962 1.23054 1.03007 1.02019 0.92637 1.22966 0.92809 1.02969 1.01507 0.93190 0.79987 0.94651 0.95207 0.76715 0.86549 0.88124 0.87338 0.87333 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.23 13.97 21.65 0.30 -63.93 15 2 C -0.06 -3.71 5.50 84.86 0.47 -3.25 15 3 Si 0.96 47.24 27.73 68.60 1.90 49.14 15 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 15 5 H -0.29 -14.41 7.11 99.48 0.71 -13.70 15 6 H -0.26 -11.87 6.52 99.48 0.65 -11.22 15 7 C -0.24 -14.22 10.47 84.04 0.88 -13.34 15 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 15 9 N -0.76 -37.05 5.35 -343.45 -1.84 -38.89 15 10 C 0.13 4.87 5.88 86.38 0.51 5.38 15 11 C 0.14 4.10 3.36 30.60 0.10 4.21 15 12 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 13 O -0.57 -17.60 12.44 -148.98 -1.85 -19.45 15 14 C -0.20 -4.54 5.71 -10.80 -0.06 -4.60 15 15 C -0.17 -3.23 9.74 30.62 0.30 -2.93 15 16 C -0.17 -3.22 10.19 30.62 0.31 -2.91 15 17 H 0.26 16.07 8.31 -92.70 -0.77 15.29 15 18 H 0.37 17.59 5.53 -92.71 -0.51 17.08 15 19 H 0.04 1.36 8.14 -2.38 -0.02 1.34 15 20 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 21 H 0.38 9.66 7.56 -74.06 -0.56 9.10 15 22 H 0.12 2.56 8.11 -2.39 -0.02 2.54 15 23 H 0.10 1.88 6.37 -2.39 -0.02 1.86 15 24 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 26 H 0.09 1.88 8.14 -2.38 -0.02 1.86 15 Total: -1.00 -68.87 223.88 1.06 -67.80 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.04 Total: 22.76 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 2.51 Total: -17.44 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -1.54 Total: -102.82 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.85 Total: -19.45 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.90 Total: 49.14 kcal Total: -68.87 1.06 -67.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070885268.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.916 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds