Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47357 * 270.00365 * 3 2 1 5 5 H 1.48503 * 109.47029 * 30.00361 * 3 2 1 6 6 H 1.48500 * 109.47261 * 150.00183 * 3 2 1 7 7 C 1.38813 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00355 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99509 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99875 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47504 * 59.99456 * 11 10 9 13 13 O 1.42907 * 109.46879 * 299.99870 * 11 10 9 14 14 C 1.53003 * 109.47289 * 180.02562 * 11 10 9 15 15 C 1.53001 * 117.51964 * 116.28130 * 14 11 10 16 16 C 1.52999 * 60.00190 * 107.47982 * 15 14 11 17 17 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 18 18 H 0.96994 * 120.00420 * 359.97438 * 9 7 2 19 19 H 1.08999 * 109.47292 * 59.99416 * 10 9 7 20 20 H 1.09005 * 109.46856 * 299.99696 * 10 9 7 21 21 H 0.96703 * 113.99453 * 299.99591 * 13 11 10 22 22 H 1.09002 * 115.54973 * 330.57913 * 14 11 10 23 23 H 1.09001 * 117.49733 * 214.97413 * 15 14 11 24 24 H 1.08995 * 117.49577 * 359.97438 * 15 14 11 25 25 H 1.09004 * 117.50150 * 252.51496 * 16 15 14 26 26 H 1.09004 * 117.49681 * 107.48417 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 1 5.8797 -1.6197 0.8888 13 8 5.9615 -1.4420 -1.1679 14 6 6.3814 -3.5164 -0.0017 15 6 7.2551 -3.8277 -1.2186 16 6 7.9057 -3.4521 0.1143 17 1 -0.4850 0.8400 0.0004 18 1 3.8646 -0.3622 -0.0014 19 1 3.8484 -3.0427 -0.8908 20 1 3.8492 -3.0422 0.8892 21 1 5.7547 -1.8910 -1.9991 22 1 5.8746 -4.3520 0.4810 23 1 7.3230 -4.8681 -1.5364 24 1 7.2846 -3.0886 -2.0191 25 1 8.3634 -2.4658 0.1908 26 1 8.4017 -4.2456 0.6735 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070885272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = -16.500703 kcal Electronic energy + Delta-G solvation = -9894.396900 eV Core-core repulsion = 7974.262645 eV Total energy + Delta-G solvation = -1920.134255 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.67065 -35.21891 -34.05149 -31.35671 -28.41539 -23.97863 -22.43939 -21.34127 -20.36577 -17.68914 -16.57485 -15.56376 -14.92650 -14.49471 -13.69107 -13.42776 -12.69016 -12.24896 -12.05625 -11.51326 -11.24569 -10.89006 -10.82021 -10.43459 -10.12589 -10.03911 -9.61645 -9.38780 -8.87857 -7.19745 -5.74044 -3.09133 3.43529 3.49358 3.49991 3.79928 4.54571 4.64212 4.80954 4.98314 5.02496 5.35699 5.54280 5.63285 5.72195 5.81007 5.89419 5.99002 6.14759 6.20947 6.52977 6.70584 7.92494 8.04286 8.45207 9.25583 9.97969 10.18794 11.44318 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.086770 B = 0.011199 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.614026 B = 2499.528209 C = 2686.549112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.131 3.869 11 C 0.124 3.876 12 H 0.100 0.900 13 O -0.558 6.558 14 C -0.184 4.184 15 C -0.178 4.178 16 C -0.175 4.175 17 H 0.259 0.741 18 H 0.366 0.634 19 H 0.029 0.971 20 H 0.033 0.967 21 H 0.372 0.628 22 H 0.110 0.890 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 -6.034 -1.055 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.003 3.997 11 C 0.065 3.935 12 H 0.117 0.883 13 O -0.364 6.364 14 C -0.203 4.203 15 C -0.215 4.215 16 C -0.212 4.212 17 H 0.069 0.931 18 H 0.199 0.801 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.220 0.780 22 H 0.128 0.872 23 H 0.109 0.891 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.981 -5.683 -0.605 15.104 hybrid contribution 0.281 0.664 -0.327 0.792 sum 14.262 -5.019 -0.933 15.148 Atomic orbital electron populations 1.69713 1.05133 1.25861 1.57637 1.24667 0.95245 0.97304 1.01931 0.86492 0.79152 0.84682 0.77903 1.21011 1.21807 1.20251 1.19069 0.80671 0.94730 1.43101 0.89344 1.42620 1.03905 1.02263 1.90991 1.21252 0.89331 0.89890 0.99220 1.21705 0.93542 0.89542 0.88755 0.88259 1.86541 1.86017 1.47840 1.15988 1.23128 0.93039 1.00565 1.03552 1.22925 1.04392 1.02006 0.92169 1.22893 0.95019 1.02816 1.00454 0.93074 0.80083 0.95341 0.94872 0.77968 0.87186 0.89092 0.88175 0.88681 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.05 13.97 55.49 0.78 -29.27 15 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 15 3 Si 0.89 23.06 27.73 -169.99 -4.71 18.34 15 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 15 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 15 6 H -0.28 -6.88 6.52 56.52 0.37 -6.51 15 7 C -0.25 -7.22 10.47 -15.06 -0.16 -7.37 15 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 15 9 N -0.75 -18.73 5.30 -59.91 -0.32 -19.05 15 10 C 0.13 2.58 5.88 -4.04 -0.02 2.56 15 11 C 0.12 2.00 3.40 -26.73 -0.09 1.91 15 12 H 0.10 1.66 8.14 -51.93 -0.42 1.24 15 13 O -0.56 -9.21 12.13 -35.23 -0.43 -9.64 15 14 C -0.18 -2.36 5.73 -90.61 -0.52 -2.88 15 15 C -0.18 -1.98 9.70 -26.73 -0.26 -2.24 15 16 C -0.17 -1.98 10.24 -26.73 -0.27 -2.25 15 17 H 0.26 7.91 8.31 -40.82 -0.34 7.57 15 18 H 0.37 9.12 5.41 -40.82 -0.22 8.90 15 19 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 21 H 0.37 5.12 7.79 45.56 0.35 5.48 15 22 H 0.11 1.35 8.08 -51.93 -0.42 0.93 15 23 H 0.09 0.89 8.14 -51.93 -0.42 0.46 15 24 H 0.10 1.10 6.47 -51.93 -0.34 0.76 15 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 LS Contribution 223.76 15.07 3.37 3.37 Total: -1.00 -32.43 223.76 -5.48 -37.91 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.75 Total: 8.58 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.42 Total: -10.24 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.46 Total: -48.32 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.43 Total: -9.64 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.34 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.43 -5.48 -37.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070885272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.411 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds