Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47357 * 270.00365 * 3 2 1 5 5 H 1.48503 * 109.47029 * 30.00361 * 3 2 1 6 6 H 1.48500 * 109.47261 * 150.00183 * 3 2 1 7 7 C 1.38813 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00355 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99509 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99875 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47504 * 59.99456 * 11 10 9 13 13 O 1.42907 * 109.46879 * 299.99870 * 11 10 9 14 14 C 1.53003 * 109.47289 * 180.02562 * 11 10 9 15 15 C 1.53001 * 117.51964 * 116.28130 * 14 11 10 16 16 C 1.52999 * 60.00190 * 107.47982 * 15 14 11 17 17 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 18 18 H 0.96994 * 120.00420 * 359.97438 * 9 7 2 19 19 H 1.08999 * 109.47292 * 59.99416 * 10 9 7 20 20 H 1.09005 * 109.46856 * 299.99696 * 10 9 7 21 21 H 0.96703 * 113.99453 * 299.99591 * 13 11 10 22 22 H 1.09002 * 115.54973 * 330.57913 * 14 11 10 23 23 H 1.09001 * 117.49733 * 214.97413 * 15 14 11 24 24 H 1.08995 * 117.49577 * 359.97438 * 15 14 11 25 25 H 1.09004 * 117.50150 * 252.51496 * 16 15 14 26 26 H 1.09004 * 117.49681 * 107.48417 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1913 -0.0011 12 1 5.8797 -1.6197 0.8888 13 8 5.9615 -1.4420 -1.1679 14 6 6.3814 -3.5164 -0.0017 15 6 7.2551 -3.8277 -1.2186 16 6 7.9057 -3.4521 0.1143 17 1 -0.4850 0.8400 0.0004 18 1 3.8646 -0.3622 -0.0014 19 1 3.8484 -3.0427 -0.8908 20 1 3.8492 -3.0422 0.8892 21 1 5.7547 -1.8910 -1.9991 22 1 5.8746 -4.3520 0.4810 23 1 7.3230 -4.8681 -1.5364 24 1 7.2846 -3.0886 -2.0191 25 1 8.3634 -2.4658 0.1908 26 1 8.4017 -4.2456 0.6735 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070885272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = -41.065126 kcal Electronic energy + Delta-G solvation = -9895.462093 eV Core-core repulsion = 7974.262645 eV Total energy + Delta-G solvation = -1921.199448 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.84816 -36.69030 -35.65380 -33.47822 -30.07029 -25.78327 -23.50524 -22.95612 -21.50812 -19.80812 -17.74179 -16.80959 -16.56224 -16.33687 -15.24102 -15.01678 -14.51238 -13.79660 -13.54532 -13.21819 -12.83943 -12.30669 -12.29892 -11.95040 -11.85957 -11.40257 -11.10019 -11.01503 -10.68661 -9.33427 -8.06079 -5.39340 1.37669 1.40033 1.47937 2.46422 2.87440 3.24639 3.30248 3.66841 3.92879 4.04331 4.07960 4.41329 4.44873 4.57635 4.82116 4.91562 5.05441 5.21804 5.26742 5.31875 5.71040 6.18175 6.78480 7.05301 7.81631 8.01033 9.15433 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.086770 B = 0.011199 C = 0.010420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.614026 B = 2499.528209 C = 2686.549112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.258 1.258 7 C -0.240 4.240 8 H 0.057 0.943 9 N -0.756 5.756 10 C 0.126 3.874 11 C 0.136 3.864 12 H 0.093 0.907 13 O -0.569 6.569 14 C -0.197 4.197 15 C -0.169 4.169 16 C -0.166 4.166 17 H 0.259 0.741 18 H 0.367 0.633 19 H 0.031 0.969 20 H 0.034 0.966 21 H 0.384 0.616 22 H 0.116 0.884 23 H 0.108 0.892 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.239 -6.039 -1.229 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.371 4.371 8 H 0.076 0.924 9 N -0.402 5.402 10 C -0.001 4.001 11 C 0.076 3.924 12 H 0.111 0.889 13 O -0.377 6.377 14 C -0.216 4.216 15 C -0.206 4.206 16 C -0.203 4.203 17 H 0.068 0.932 18 H 0.201 0.799 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.233 0.767 22 H 0.134 0.866 23 H 0.126 0.874 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.240 -5.723 -0.786 17.237 hybrid contribution -0.417 0.553 -0.288 0.750 sum 15.823 -5.170 -1.074 16.681 Atomic orbital electron populations 1.69882 1.07052 1.26815 1.59547 1.25495 0.96127 1.01239 1.02432 0.85361 0.78332 0.79596 0.78166 1.20400 1.21840 1.18306 1.19081 0.82725 0.93596 1.41665 0.92449 1.42645 1.02427 1.04242 1.90889 1.21488 0.91657 0.87779 0.99134 1.21490 0.91053 0.91250 0.88565 0.88908 1.86512 1.85884 1.48607 1.16661 1.22944 0.93855 0.98900 1.05865 1.23042 1.02657 1.03100 0.91801 1.22967 0.93424 1.03254 1.00678 0.93188 0.79921 0.95068 0.94792 0.76660 0.86601 0.87365 0.88083 0.89214 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.21 13.97 21.65 0.30 -63.91 15 2 C -0.06 -3.72 5.50 84.86 0.47 -3.25 15 3 Si 0.96 47.43 27.73 68.60 1.90 49.33 15 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 15 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 15 6 H -0.26 -11.86 6.52 99.48 0.65 -11.22 15 7 C -0.24 -14.19 10.47 84.03 0.88 -13.31 15 8 H 0.06 3.68 8.06 -2.91 -0.02 3.65 15 9 N -0.76 -37.02 5.30 -343.45 -1.82 -38.84 15 10 C 0.13 4.84 5.88 86.38 0.51 5.35 15 11 C 0.14 4.12 3.40 30.59 0.10 4.22 15 12 H 0.09 2.94 8.14 -2.39 -0.02 2.92 15 13 O -0.57 -17.52 12.13 -148.98 -1.81 -19.33 15 14 C -0.20 -4.55 5.73 -10.79 -0.06 -4.61 15 15 C -0.17 -3.22 9.70 30.59 0.30 -2.92 15 16 C -0.17 -3.24 10.24 30.60 0.31 -2.93 15 17 H 0.26 16.06 8.31 -92.71 -0.77 15.29 15 18 H 0.37 17.65 5.41 -92.71 -0.50 17.15 15 19 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 20 H 0.03 1.32 8.14 -2.38 -0.02 1.30 15 21 H 0.38 9.70 7.79 -74.06 -0.58 9.12 15 22 H 0.12 2.55 8.08 -2.39 -0.02 2.53 15 23 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 24 H 0.10 1.91 6.47 -2.39 -0.02 1.90 15 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 15 26 H 0.11 1.72 8.14 -2.38 -0.02 1.70 15 Total: -1.00 -68.64 223.76 1.12 -67.52 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.04 Total: 22.66 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 2.51 Total: -17.44 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -1.52 Total: -102.75 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.81 Total: -19.33 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.90 Total: 49.33 kcal Total: -68.64 1.12 -67.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070885272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.455 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds