Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 119.99880 * 2 1 4 4 H 1.08000 * 120.00211 * 203.52224 * 3 2 1 5 5 C 1.38813 * 120.00248 * 23.52171 * 3 2 1 6 6 N 1.31620 * 119.99729 * 14.95823 * 5 3 2 7 7 Si 1.86799 * 120.00151 * 194.96544 * 5 3 2 8 8 H 1.48503 * 109.47285 * 59.99880 * 7 5 3 9 9 H 1.48504 * 109.47058 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46940 * 299.99938 * 7 5 3 11 11 C 1.46497 * 119.99930 * 180.27963 * 2 1 3 12 12 H 1.09006 * 110.27373 * 179.35787 * 11 2 1 13 13 C 1.54591 * 110.31157 * 57.16799 * 11 2 1 14 14 C 1.54941 * 102.92263 * 219.12893 * 13 11 2 15 15 N 1.48531 * 103.22746 * 37.40809 * 14 13 11 16 16 C 1.47900 * 105.81942 * 320.79755 * 15 14 13 17 17 H 1.09012 * 109.47082 * 274.92804 * 1 2 3 18 18 H 1.08994 * 109.47709 * 34.93017 * 1 2 3 19 19 H 1.09002 * 109.47666 * 154.93396 * 1 2 3 20 20 H 0.96993 * 119.99759 * 179.97438 * 6 5 3 21 21 H 1.09004 * 110.72312 * 337.47822 * 13 11 2 22 22 H 1.09003 * 110.73071 * 100.76837 * 13 11 2 23 23 H 1.09002 * 110.66202 * 278.97498 * 14 13 11 24 24 H 1.08998 * 110.81066 * 155.91430 * 14 13 11 25 25 H 1.00903 * 110.99613 * 81.30980 * 15 14 13 26 26 H 1.09000 * 109.91451 * 265.97253 * 16 15 14 27 27 H 1.08996 * 110.07856 * 144.77761 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1623 1.2248 -0.3733 5 6 1.5421 2.3381 0.4798 6 7 0.4416 2.2521 1.1967 7 14 2.2861 4.0106 0.1077 8 1 2.3334 4.2155 -1.3624 9 1 1.4534 5.0721 0.7283 10 1 3.6628 4.0740 0.6607 11 6 2.1974 -1.2687 -0.0062 12 1 3.2718 -1.0845 -0.0168 13 6 1.7850 -2.1205 -1.2286 14 6 1.7393 -3.5572 -0.6502 15 7 1.1898 -3.3566 0.7150 16 6 1.8122 -2.1143 1.2217 17 1 -0.3634 0.0883 1.0240 18 1 -0.3634 0.8425 -0.5884 19 1 -0.3634 -0.9309 -0.4354 20 1 0.0173 3.0572 1.5323 21 1 0.8028 -1.8205 -1.5940 22 1 2.5312 -2.0467 -2.0197 23 1 2.7408 -3.9848 -0.6028 24 1 1.0790 -4.1918 -1.2413 25 1 0.1844 -3.2739 0.6916 26 1 2.7034 -2.3552 1.8013 27 1 1.1029 -1.5665 1.8421 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070895336.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = 4.750886 kcal Electronic energy + Delta-G solvation = -10260.778208 eV Core-core repulsion = 8439.284153 eV Total energy + Delta-G solvation = -1821.494055 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.75770 -36.36266 -33.03861 -30.13310 -29.02586 -28.00000 -24.45986 -22.53985 -20.55578 -18.91799 -17.56538 -16.65098 -16.16503 -15.36494 -14.88595 -14.55401 -14.22932 -13.33046 -12.98323 -12.81787 -12.54569 -12.43723 -12.34917 -12.13029 -12.01746 -11.73271 -11.44511 -10.65923 -9.66354 -8.72065 -7.85666 -5.33955 1.44791 1.47304 1.54105 2.48683 3.26345 3.36228 3.69136 4.02823 4.21371 4.42905 4.50658 4.62729 4.76658 4.80255 5.02218 5.09909 5.18313 5.31220 5.38104 5.61233 5.65618 5.86361 6.29675 6.46609 7.12207 7.85039 8.29373 9.17154 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.089190 B = 0.013581 C = 0.012976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.862085 B = 2061.158795 C = 2157.337075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.608 5.608 3 C -0.271 4.271 4 H 0.068 0.932 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.970 3.030 8 H -0.279 1.279 9 H -0.293 1.293 10 H -0.274 1.274 11 C 0.139 3.861 12 H 0.060 0.940 13 C -0.165 4.165 14 C 0.051 3.949 15 N -0.674 5.674 16 C 0.034 3.966 17 H 0.004 0.996 18 H 0.010 0.990 19 H 0.030 0.970 20 H 0.249 0.751 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.336 0.664 26 H 0.069 0.931 27 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -7.950 -3.817 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.330 5.330 3 C -0.401 4.401 4 H 0.086 0.914 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.798 3.202 8 H -0.205 1.205 9 H -0.219 1.219 10 H -0.200 1.200 11 C 0.030 3.970 12 H 0.079 0.921 13 C -0.206 4.206 14 C -0.079 4.079 15 N -0.301 5.301 16 C -0.098 4.098 17 H 0.022 0.978 18 H 0.029 0.971 19 H 0.049 0.951 20 H 0.058 0.942 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.151 0.849 26 H 0.087 0.913 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.040 -8.312 -3.374 9.200 hybrid contribution -0.308 1.983 -0.418 2.050 sum 1.732 -6.328 -3.792 7.578 Atomic orbital electron populations 1.20414 0.83049 0.95610 0.97405 1.44158 1.01839 1.01211 1.85822 1.19531 0.98978 0.86980 1.34598 0.91418 1.25811 0.98906 1.01990 0.98105 1.70223 1.22478 1.27870 1.37730 0.85298 0.77738 0.79350 0.77797 1.20535 1.21931 1.20010 1.21881 0.95580 0.85748 0.93796 0.92122 1.23482 1.01689 0.96873 0.98543 1.23093 1.01669 0.94866 0.88247 1.62818 1.10846 1.34312 1.22120 1.23124 0.99281 0.89550 0.97860 0.97763 0.97132 0.95119 0.94219 0.92297 0.90799 0.89599 0.88934 0.84895 0.91276 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 7.83 127.77 1.00 10.02 15 2 N -0.61 -30.93 2.82 -697.89 -1.97 -32.90 15 3 C -0.27 -15.19 9.58 84.03 0.81 -14.39 15 4 H 0.07 3.69 7.85 -2.91 -0.02 3.67 15 5 C -0.05 -3.01 5.06 84.86 0.43 -2.58 15 6 N -0.94 -56.29 10.86 21.65 0.24 -56.05 15 7 Si 0.97 45.60 29.58 68.60 2.03 47.62 15 8 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 9 H -0.29 -13.80 7.11 99.48 0.71 -13.10 15 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 11 C 0.14 5.71 3.47 45.87 0.16 5.87 15 12 H 0.06 2.55 7.91 -2.38 -0.02 2.53 15 13 C -0.17 -5.45 6.54 31.80 0.21 -5.25 15 14 C 0.05 1.36 7.55 86.65 0.65 2.01 15 15 N -0.67 -21.02 7.51 -502.21 -3.77 -24.80 15 16 C 0.03 1.28 7.00 86.44 0.60 1.89 15 17 H 0.00 0.23 7.28 -2.38 -0.02 0.21 15 18 H 0.01 0.55 7.41 -2.39 -0.02 0.53 15 19 H 0.03 1.30 6.39 -2.39 -0.02 1.29 15 20 H 0.25 14.52 8.31 -92.71 -0.77 13.75 15 21 H 0.06 2.07 6.28 -2.38 -0.01 2.06 15 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.09 2.12 8.14 -2.39 -0.02 2.11 15 24 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.34 10.05 8.92 -89.69 -0.80 9.25 15 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.04 1.97 7.37 -2.39 -0.02 1.95 15 Total: -1.00 -62.03 219.41 0.73 -61.30 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.35 Total: 7.25 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 3.86 Total: -2.42 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -5.51 Total: -113.75 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -62.03 0.73 -61.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070895336.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.052 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds