Wall clock time and date at job start Mon Mar 30 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36945 * 119.99439 * 2 1 4 4 H 1.07995 * 119.99918 * 201.73166 * 3 2 1 5 5 C 1.38815 * 120.00101 * 21.73347 * 3 2 1 6 6 N 1.31625 * 119.99704 * 13.55125 * 5 3 2 7 7 Si 1.86795 * 119.99904 * 193.55672 * 5 3 2 8 8 H 1.48500 * 109.47293 * 89.99905 * 7 5 3 9 9 H 1.48499 * 109.46951 * 209.99715 * 7 5 3 10 10 H 1.48502 * 109.47199 * 329.99572 * 7 5 3 11 11 C 1.46491 * 120.00514 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.90852 * 176.13269 * 11 2 1 13 13 C 1.55137 * 110.99289 * 300.00513 * 11 2 1 14 14 C 1.54316 * 103.17891 * 153.83066 * 13 11 2 15 15 N 1.47444 * 107.23408 * 337.62861 * 14 13 11 16 16 C 1.47844 * 108.56531 * 359.00910 * 15 14 13 17 17 H 1.09000 * 109.47394 * 274.47002 * 1 2 3 18 18 H 1.08997 * 109.47360 * 34.47888 * 1 2 3 19 19 H 1.09009 * 109.46605 * 154.47650 * 1 2 3 20 20 H 0.97005 * 119.99478 * 180.02562 * 6 5 3 21 21 H 1.08998 * 110.70622 * 35.35577 * 13 11 2 22 22 H 1.09000 * 110.70214 * 272.30039 * 13 11 2 23 23 H 1.09005 * 109.88852 * 97.03383 * 14 13 11 24 24 H 1.08999 * 109.88979 * 218.21951 * 14 13 11 25 25 H 1.00903 * 111.00195 * 236.74736 * 15 14 13 26 26 H 1.09002 * 110.37159 * 142.92677 * 16 15 14 27 27 H 1.08998 * 110.37344 * 265.15586 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1720 1.2194 -0.3463 5 6 1.5295 2.3454 0.4451 6 7 0.3956 2.2718 1.1095 7 14 2.3041 4.0101 0.1012 8 1 1.7988 4.5332 -1.1935 9 1 1.9488 4.9557 1.1897 10 1 3.7805 3.8647 0.0341 11 6 2.1976 -1.2686 0.0006 12 1 3.2719 -1.0974 -0.0682 13 6 1.8483 -2.1115 1.2552 14 6 2.1110 -3.5595 0.7906 15 7 2.0306 -3.5672 -0.6816 16 6 1.7078 -2.2000 -1.1426 17 1 -0.3634 0.0801 1.0245 18 1 -0.3634 0.8471 -0.5817 19 1 -0.3633 -0.9275 -0.4428 20 1 -0.0380 3.0820 1.4202 21 1 0.8018 -1.9787 1.5297 22 1 2.5001 -1.8501 2.0888 23 1 3.1038 -3.8769 1.1094 24 1 1.3550 -4.2254 1.2068 25 1 1.3402 -4.2294 -1.0026 26 1 2.2389 -1.9762 -2.0678 27 1 0.6328 -2.0923 -1.2874 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070895343.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:40 Heat of formation + Delta-G solvation = 26.037271 kcal Electronic energy + Delta-G solvation = -10201.505684 eV Core-core repulsion = 8380.934676 eV Total energy + Delta-G solvation = -1820.571008 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.03109 -34.59110 -31.10413 -28.82507 -27.31206 -26.00200 -22.66706 -20.65887 -19.03231 -16.97014 -16.03459 -14.99891 -14.39018 -13.41661 -12.78826 -12.65153 -12.55322 -12.41006 -11.28129 -11.01494 -10.87463 -10.72657 -10.42915 -10.37850 -10.13998 -9.82226 -9.70370 -8.53662 -8.01562 -6.75361 -5.71900 -3.16923 3.39669 3.45691 3.47298 4.46573 4.74569 5.33546 5.37865 5.49226 5.75581 5.81453 5.95693 6.16355 6.22021 6.44252 6.56028 6.74713 6.88307 6.99511 7.26905 7.39200 7.70173 7.76240 7.81825 8.40456 9.24321 9.87966 10.36734 11.33315 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.087218 B = 0.013130 C = 0.012737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.957297 B = 2132.024365 C = 2197.725803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.590 5.590 3 C -0.255 4.255 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.175 3.825 12 H 0.075 0.925 13 C -0.162 4.162 14 C 0.048 3.952 15 N -0.687 5.687 16 C 0.023 3.977 17 H 0.029 0.971 18 H 0.043 0.957 19 H -0.001 1.001 20 H 0.252 0.748 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.329 0.671 26 H 0.071 0.929 27 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -7.437 -1.609 7.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.311 5.311 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.065 3.935 12 H 0.093 0.907 13 C -0.203 4.203 14 C -0.082 4.082 15 N -0.316 5.316 16 C -0.108 4.108 17 H 0.047 0.953 18 H 0.062 0.938 19 H 0.017 0.983 20 H 0.062 0.938 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.143 0.857 26 H 0.089 0.911 27 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.555 -7.211 -1.648 7.559 hybrid contribution -0.704 0.980 0.220 1.226 sum 0.851 -6.232 -1.428 6.449 Atomic orbital electron populations 1.20784 0.82753 0.95490 0.99282 1.43864 1.01799 1.00226 1.85196 1.19279 0.97724 0.85174 1.36326 0.91202 1.25013 0.97907 0.98531 0.98353 1.70091 1.18941 1.26971 1.39373 0.86210 0.78741 0.83922 0.77418 1.21486 1.21775 1.20447 1.21475 0.96062 0.85571 0.90393 0.90712 1.23336 1.01835 0.94300 1.00855 1.22526 1.00362 0.97170 0.88134 1.61849 1.52203 1.07732 1.09768 1.23443 0.99269 0.88051 0.99995 0.95317 0.93785 0.98257 0.93776 0.91766 0.91628 0.91515 0.94107 0.85676 0.91109 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 7.89 59.85 0.47 4.53 15 2 N -0.59 -15.18 2.97 -170.75 -0.51 -15.69 15 3 C -0.26 -7.17 9.63 -15.05 -0.14 -7.31 15 4 H 0.07 1.92 7.83 -52.49 -0.41 1.51 15 5 C 0.00 0.00 5.09 -17.43 -0.09 -0.09 15 6 N -0.91 -26.84 10.67 55.49 0.59 -26.25 15 7 Si 0.91 22.11 29.57 -169.99 -5.03 17.09 15 8 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 11 C 0.18 3.78 3.56 -65.54 -0.23 3.55 15 12 H 0.07 1.66 7.93 -51.93 -0.41 1.24 15 13 C -0.16 -3.13 6.52 -24.91 -0.16 -3.29 15 14 C 0.05 0.76 7.58 -2.84 -0.02 0.74 15 15 N -0.69 -11.14 7.39 -110.51 -0.82 -11.96 15 16 C 0.02 0.43 7.12 -2.04 -0.01 0.42 15 17 H 0.03 0.78 7.41 -51.93 -0.38 0.39 15 18 H 0.04 1.18 7.22 -51.93 -0.38 0.81 15 19 H 0.00 -0.02 5.96 -51.92 -0.31 -0.33 15 20 H 0.25 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.06 1.31 7.33 -51.93 -0.38 0.93 15 22 H 0.06 1.27 8.14 -51.93 -0.42 0.84 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 25 H 0.33 4.58 8.91 -39.29 -0.35 4.22 15 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 27 H 0.04 0.84 5.98 -51.93 -0.31 0.53 15 LS Contribution 218.78 15.07 3.30 3.30 Total: -1.00 -29.49 218.78 -6.41 -35.91 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.76 Total: -0.93 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.19 Total: -1.46 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.73 Total: -53.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.49 -6.41 -35.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070895343.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.946 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds