Wall clock time and date at job start Mon Mar 30 2020 01:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36945 * 119.99439 * 2 1 4 4 H 1.07995 * 119.99918 * 201.73166 * 3 2 1 5 5 C 1.38815 * 120.00101 * 21.73347 * 3 2 1 6 6 N 1.31625 * 119.99704 * 13.55125 * 5 3 2 7 7 Si 1.86795 * 119.99904 * 193.55672 * 5 3 2 8 8 H 1.48500 * 109.47293 * 89.99905 * 7 5 3 9 9 H 1.48499 * 109.46951 * 209.99715 * 7 5 3 10 10 H 1.48502 * 109.47199 * 329.99572 * 7 5 3 11 11 C 1.46491 * 120.00514 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.90852 * 176.13269 * 11 2 1 13 13 C 1.55137 * 110.99289 * 300.00513 * 11 2 1 14 14 C 1.54316 * 103.17891 * 153.83066 * 13 11 2 15 15 N 1.47444 * 107.23408 * 337.62861 * 14 13 11 16 16 C 1.47844 * 108.56531 * 359.00910 * 15 14 13 17 17 H 1.09000 * 109.47394 * 274.47002 * 1 2 3 18 18 H 1.08997 * 109.47360 * 34.47888 * 1 2 3 19 19 H 1.09009 * 109.46605 * 154.47650 * 1 2 3 20 20 H 0.97005 * 119.99478 * 180.02562 * 6 5 3 21 21 H 1.08998 * 110.70622 * 35.35577 * 13 11 2 22 22 H 1.09000 * 110.70214 * 272.30039 * 13 11 2 23 23 H 1.09005 * 109.88852 * 97.03383 * 14 13 11 24 24 H 1.08999 * 109.88979 * 218.21951 * 14 13 11 25 25 H 1.00903 * 111.00195 * 236.74736 * 15 14 13 26 26 H 1.09002 * 110.37159 * 142.92677 * 16 15 14 27 27 H 1.08998 * 110.37344 * 265.15586 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1720 1.2194 -0.3463 5 6 1.5295 2.3454 0.4451 6 7 0.3956 2.2718 1.1095 7 14 2.3041 4.0101 0.1012 8 1 1.7988 4.5332 -1.1935 9 1 1.9488 4.9557 1.1897 10 1 3.7805 3.8647 0.0341 11 6 2.1976 -1.2686 0.0006 12 1 3.2719 -1.0974 -0.0682 13 6 1.8483 -2.1115 1.2552 14 6 2.1110 -3.5595 0.7906 15 7 2.0306 -3.5672 -0.6816 16 6 1.7078 -2.2000 -1.1426 17 1 -0.3634 0.0801 1.0245 18 1 -0.3634 0.8471 -0.5817 19 1 -0.3633 -0.9275 -0.4428 20 1 -0.0380 3.0820 1.4202 21 1 0.8018 -1.9787 1.5297 22 1 2.5001 -1.8501 2.0888 23 1 3.1038 -3.8769 1.1094 24 1 1.3550 -4.2254 1.2068 25 1 1.3402 -4.2294 -1.0026 26 1 2.2389 -1.9762 -2.0678 27 1 0.6328 -2.0923 -1.2874 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070895343.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:40 Heat of formation + Delta-G solvation = 4.873910 kcal Electronic energy + Delta-G solvation = -10202.423396 eV Core-core repulsion = 8380.934676 eV Total energy + Delta-G solvation = -1821.488720 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.61507 -36.47389 -33.10891 -30.34262 -28.96009 -28.08808 -24.62364 -22.05882 -20.77493 -18.96254 -17.72786 -16.65342 -16.24323 -15.15347 -14.62662 -14.40907 -14.25710 -14.00617 -13.03649 -12.85358 -12.55532 -12.48681 -12.32411 -12.13776 -12.02470 -11.83075 -11.41266 -10.65523 -9.34766 -8.81892 -7.85799 -5.33507 1.46147 1.47528 1.56557 2.48519 3.24873 3.29139 3.79757 3.91016 4.14907 4.31357 4.38956 4.61008 4.73737 4.86738 4.97862 5.06020 5.22393 5.32944 5.39486 5.59998 5.66627 5.88496 6.29956 6.55371 7.11931 7.83839 8.27633 9.17797 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.087218 B = 0.013130 C = 0.012737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.957297 B = 2132.024365 C = 2197.725803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.606 5.606 3 C -0.268 4.268 4 H 0.071 0.929 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.973 3.027 8 H -0.285 1.285 9 H -0.294 1.294 10 H -0.268 1.268 11 C 0.161 3.839 12 H 0.065 0.935 13 C -0.158 4.158 14 C 0.057 3.943 15 N -0.682 5.682 16 C 0.038 3.962 17 H 0.002 0.998 18 H 0.017 0.983 19 H 0.030 0.970 20 H 0.249 0.751 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.347 0.653 26 H 0.071 0.929 27 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -8.513 -2.088 8.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.328 5.328 3 C -0.398 4.398 4 H 0.089 0.911 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.193 1.193 11 C 0.052 3.948 12 H 0.083 0.917 13 C -0.198 4.198 14 C -0.073 4.073 15 N -0.313 5.313 16 C -0.093 4.093 17 H 0.020 0.980 18 H 0.035 0.965 19 H 0.049 0.951 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.163 0.837 26 H 0.090 0.910 27 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.190 -8.336 -2.139 8.880 hybrid contribution -0.871 1.240 0.370 1.560 sum 1.319 -7.095 -1.769 7.430 Atomic orbital electron populations 1.20487 0.82821 0.95834 0.97409 1.44055 1.02035 1.01172 1.85564 1.19613 0.97963 0.86480 1.35769 0.91115 1.25808 0.98628 1.01944 0.98537 1.70254 1.20304 1.27474 1.40564 0.85176 0.78385 0.79421 0.76922 1.21154 1.22055 1.19282 1.21689 0.95279 0.84873 0.92936 0.91704 1.23216 1.00693 0.96379 0.99541 1.22506 1.02038 0.94970 0.87746 1.61818 1.52925 1.06563 1.09967 1.23182 0.98841 0.88587 0.98707 0.97968 0.96451 0.95129 0.94223 0.93198 0.92256 0.90205 0.91483 0.83664 0.91044 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 7.89 127.77 1.01 10.09 15 2 N -0.61 -31.26 2.97 -694.13 -2.06 -33.32 15 3 C -0.27 -15.12 9.63 84.03 0.81 -14.31 15 4 H 0.07 3.88 7.83 -2.91 -0.02 3.86 15 5 C -0.05 -3.09 5.09 84.86 0.43 -2.66 15 6 N -0.94 -56.47 10.67 21.65 0.23 -56.24 15 7 Si 0.97 45.68 29.57 68.60 2.03 47.71 15 8 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 9 H -0.29 -13.83 7.11 99.48 0.71 -13.12 15 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 11 C 0.16 6.80 3.56 46.54 0.17 6.96 15 12 H 0.06 2.84 7.93 -2.39 -0.02 2.82 15 13 C -0.16 -5.86 6.52 31.77 0.21 -5.65 15 14 C 0.06 1.62 7.58 86.65 0.66 2.27 15 15 N -0.68 -19.86 7.39 -503.54 -3.72 -23.58 15 16 C 0.04 1.33 7.12 86.94 0.62 1.95 15 17 H 0.00 0.11 7.41 -2.39 -0.02 0.10 15 18 H 0.02 0.93 7.22 -2.39 -0.02 0.91 15 19 H 0.03 1.32 5.96 -2.38 -0.01 1.31 15 20 H 0.25 14.48 8.31 -92.70 -0.77 13.71 15 21 H 0.05 1.99 7.33 -2.39 -0.02 1.97 15 22 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 23 H 0.08 2.12 8.14 -2.38 -0.02 2.10 15 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 15 25 H 0.35 8.28 8.91 -89.69 -0.80 7.48 15 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 27 H 0.04 1.49 5.98 -2.39 -0.01 1.48 15 Total: -1.00 -62.31 218.78 0.73 -61.59 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 0.35 Total: 5.20 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 3.90 Total: -1.35 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -5.55 Total: -113.14 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -62.31 0.73 -61.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070895343.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.461 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds