Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48499 * 109.47264 * 275.50629 * 3 2 1 5 5 H 1.48501 * 109.47348 * 35.50787 * 3 2 1 6 6 H 1.48498 * 109.46832 * 155.50514 * 3 2 1 7 7 C 1.38944 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00048 * 337.98878 * 7 2 1 9 9 N 1.37095 * 120.00216 * 157.99569 * 7 2 1 10 10 C 1.46754 * 124.35048 * 139.88367 * 9 7 2 11 11 C 1.54484 * 105.47437 * 163.00267 * 10 9 7 12 12 H 1.08998 * 110.96810 * 143.53278 * 11 10 9 13 13 O 1.42899 * 110.96748 * 267.25815 * 11 10 9 14 14 C 1.54624 * 101.76314 * 25.41481 * 11 10 9 15 15 C 1.34421 * 124.34508 * 319.90273 * 9 7 2 16 16 O 1.21289 * 124.94279 * 0.38794 * 15 9 7 17 17 H 0.97000 * 120.00278 * 359.97438 * 1 2 3 18 18 H 1.09000 * 110.25107 * 44.00227 * 10 9 7 19 19 H 1.08997 * 110.32090 * 282.03818 * 10 9 7 20 20 H 0.96708 * 113.99540 * 176.90859 * 13 11 10 21 21 H 1.08994 * 110.48801 * 93.88000 * 14 11 10 22 22 H 1.08997 * 110.48757 * 216.52365 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3792 2.1137 -1.3936 5 1 1.5085 2.6163 0.8132 6 1 3.5989 1.4095 0.5805 7 6 2.0089 -1.2033 -0.0005 8 1 1.5280 -2.1047 0.3496 9 7 3.3050 -1.2463 -0.4454 10 6 4.3703 -2.0361 0.1830 11 6 5.4943 -2.1260 -0.8730 12 1 6.4764 -2.0855 -0.4018 13 8 5.3584 -3.3074 -1.6653 14 6 5.2340 -0.8583 -1.7192 15 6 3.7632 -0.5702 -1.5130 16 8 3.0947 0.1640 -2.2096 17 1 -0.4850 0.8400 0.0004 18 1 4.0051 -3.0328 0.4307 19 1 4.7345 -1.5348 1.0797 20 1 6.0134 -3.3841 -2.3726 21 1 5.8397 -0.0273 -1.3578 22 1 5.4407 -1.0529 -2.7715 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075527387.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -69.687466 kcal Electronic energy + Delta-G solvation = -10228.088999 eV Core-core repulsion = 8169.815299 eV Total energy + Delta-G solvation = -2058.273701 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.55516 -36.47871 -34.50562 -32.53740 -30.13555 -26.77725 -24.49425 -21.04728 -19.61163 -17.63298 -16.79921 -15.60713 -14.71296 -14.34537 -14.01050 -13.41889 -12.97415 -12.76415 -12.30414 -11.84055 -11.43740 -10.85850 -10.59876 -10.27819 -10.07616 -9.90361 -8.75603 -8.38054 -7.66046 -6.27242 -3.97791 3.31887 3.44603 3.63548 3.82611 4.37072 4.51419 4.65387 4.91973 5.01636 5.24380 5.30027 5.88098 5.95953 6.17038 6.24860 6.28949 7.78364 7.82608 7.90513 8.66004 8.88496 9.34912 9.87603 10.80084 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.068498 B = 0.020192 C = 0.018187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.675813 B = 1386.321555 C = 1539.195088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.085 3.915 3 Si 0.901 3.099 4 H -0.252 1.252 5 H -0.301 1.301 6 H -0.279 1.279 7 C -0.341 4.341 8 H 0.097 0.903 9 N -0.459 5.459 10 C 0.098 3.902 11 C 0.090 3.910 12 H 0.076 0.924 13 O -0.554 6.554 14 C -0.187 4.187 15 C 0.452 3.548 16 O -0.551 6.551 17 H 0.274 0.726 18 H 0.080 0.920 19 H 0.073 0.927 20 H 0.374 0.626 21 H 0.093 0.907 22 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.196 -2.488 0.032 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.124 4.124 3 Si 0.729 3.271 4 H -0.177 1.177 5 H -0.230 1.230 6 H -0.205 1.205 7 C -0.467 4.467 8 H 0.115 0.885 9 N -0.181 5.181 10 C -0.026 4.026 11 C 0.031 3.969 12 H 0.093 0.907 13 O -0.360 6.360 14 C -0.228 4.228 15 C 0.241 3.759 16 O -0.434 6.434 17 H 0.084 0.916 18 H 0.098 0.902 19 H 0.091 0.909 20 H 0.221 0.779 21 H 0.111 0.889 22 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.086 -2.159 0.146 11.296 hybrid contribution 0.893 0.902 -0.236 1.291 sum 11.979 -1.257 -0.089 12.045 Atomic orbital electron populations 1.69770 1.06656 1.28348 1.44734 1.25283 0.95035 0.99299 0.92788 0.86475 0.79197 0.82534 0.78849 1.17707 1.22968 1.20485 1.18775 0.84533 0.96521 1.46826 0.88494 1.43894 1.08379 1.42230 1.23622 1.22111 0.88202 0.98125 0.94129 1.22728 0.98207 0.84055 0.91950 0.90673 1.86597 1.59123 1.41861 1.48377 1.22991 0.98205 0.99353 1.02227 1.20415 0.88920 0.84726 0.81837 1.90572 1.63108 1.39935 1.49832 0.91584 0.90196 0.90945 0.77878 0.88890 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.87 13.96 55.50 0.77 -26.09 14 2 C 0.09 2.59 5.09 -17.47 -0.09 2.50 14 3 Si 0.90 24.57 25.00 -169.99 -4.25 20.32 14 4 H -0.25 -7.26 6.34 56.52 0.36 -6.91 14 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 14 6 H -0.28 -7.26 7.11 56.52 0.40 -6.86 14 7 C -0.34 -10.09 10.22 -14.94 -0.15 -10.24 14 8 H 0.10 2.96 8.06 -52.48 -0.42 2.53 14 9 N -0.46 -11.78 2.59 -113.63 -0.29 -12.07 14 10 C 0.10 1.89 7.01 -3.13 -0.02 1.87 14 11 C 0.09 1.39 4.53 -25.10 -0.11 1.28 14 12 H 0.08 0.86 8.14 -51.93 -0.42 0.44 14 13 O -0.55 -8.47 13.42 -35.23 -0.47 -8.95 14 14 C -0.19 -3.32 6.61 -26.74 -0.18 -3.50 14 15 C 0.45 11.49 6.33 -10.86 -0.07 11.42 14 16 O -0.55 -16.33 13.70 5.55 0.08 -16.25 14 17 H 0.27 7.99 8.31 -40.82 -0.34 7.65 14 18 H 0.08 1.52 8.11 -51.93 -0.42 1.10 14 19 H 0.07 1.24 8.14 -51.93 -0.42 0.82 14 20 H 0.37 3.67 9.12 45.56 0.42 4.08 14 21 H 0.09 1.45 8.14 -51.93 -0.42 1.03 14 22 H 0.09 1.48 8.11 -51.93 -0.42 1.06 14 LS Contribution 195.13 15.07 2.94 2.94 Total: -1.00 -36.16 195.13 -3.14 -39.30 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: -1.30 Total: -2.54 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.62 Total: 3.33 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.48 Total: -38.17 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.40 Total: -25.20 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.25 Total: 20.32 kcal Total LS contribution 2.94 Total: 2.94 kcal Total: -36.16 -3.14 -39.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075527387.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.386 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds