Wall clock time and date at job start Mon Mar 30 2020 01:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 119.99696 * 2 1 4 4 H 1.48499 * 109.47264 * 275.50629 * 3 2 1 5 5 H 1.48501 * 109.47348 * 35.50787 * 3 2 1 6 6 H 1.48498 * 109.46832 * 155.50514 * 3 2 1 7 7 C 1.38944 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00048 * 337.98878 * 7 2 1 9 9 N 1.37095 * 120.00216 * 157.99569 * 7 2 1 10 10 C 1.46754 * 124.35048 * 139.88367 * 9 7 2 11 11 C 1.54484 * 105.47437 * 163.00267 * 10 9 7 12 12 H 1.08998 * 110.96810 * 143.53278 * 11 10 9 13 13 O 1.42899 * 110.96748 * 267.25815 * 11 10 9 14 14 C 1.54624 * 101.76314 * 25.41481 * 11 10 9 15 15 C 1.34421 * 124.34508 * 319.90273 * 9 7 2 16 16 O 1.21289 * 124.94279 * 0.38794 * 15 9 7 17 17 H 0.97000 * 120.00278 * 359.97438 * 1 2 3 18 18 H 1.09000 * 110.25107 * 44.00227 * 10 9 7 19 19 H 1.08997 * 110.32090 * 282.03818 * 10 9 7 20 20 H 0.96708 * 113.99540 * 176.90859 * 13 11 10 21 21 H 1.08994 * 110.48801 * 93.88000 * 14 11 10 22 22 H 1.08997 * 110.48757 * 216.52365 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3792 2.1137 -1.3936 5 1 1.5085 2.6163 0.8132 6 1 3.5989 1.4095 0.5805 7 6 2.0089 -1.2033 -0.0005 8 1 1.5280 -2.1047 0.3496 9 7 3.3050 -1.2463 -0.4454 10 6 4.3703 -2.0361 0.1830 11 6 5.4943 -2.1260 -0.8730 12 1 6.4764 -2.0855 -0.4018 13 8 5.3584 -3.3074 -1.6653 14 6 5.2340 -0.8583 -1.7192 15 6 3.7632 -0.5702 -1.5130 16 8 3.0947 0.1640 -2.2096 17 1 -0.4850 0.8400 0.0004 18 1 4.0051 -3.0328 0.4307 19 1 4.7345 -1.5348 1.0797 20 1 6.0134 -3.3841 -2.3726 21 1 5.8397 -0.0273 -1.3578 22 1 5.4407 -1.0529 -2.7715 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075527387.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:47 Heat of formation + Delta-G solvation = -100.788671 kcal Electronic energy + Delta-G solvation = -10229.437649 eV Core-core repulsion = 8169.815299 eV Total energy + Delta-G solvation = -2059.622350 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.27948 -37.99150 -36.34340 -34.60377 -31.83943 -28.33938 -26.53914 -22.44938 -21.58772 -19.30252 -18.43438 -17.48457 -16.41844 -16.09841 -15.86150 -15.04235 -14.81687 -14.50025 -14.02479 -13.77648 -12.95910 -12.92878 -12.36213 -12.10753 -11.81843 -11.26456 -10.94748 -10.34923 -9.71037 -8.56510 -6.26900 1.17288 1.30496 1.43226 1.88007 2.34128 2.71850 3.03464 3.29374 3.61737 3.68119 4.11487 4.59975 4.66005 4.80706 4.84229 5.01132 5.60380 5.72481 6.56924 6.81001 6.99556 7.16361 7.84281 8.55016 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.068498 B = 0.020192 C = 0.018187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.675813 B = 1386.321555 C = 1539.195088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.034 3.966 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.348 4.348 8 H 0.069 0.931 9 N -0.481 5.481 10 C 0.085 3.915 11 C 0.110 3.890 12 H 0.138 0.862 13 O -0.577 6.577 14 C -0.174 4.174 15 C 0.431 3.569 16 O -0.607 6.607 17 H 0.277 0.723 18 H 0.074 0.926 19 H 0.100 0.900 20 H 0.400 0.600 21 H 0.126 0.874 22 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.517 -2.562 0.260 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.171 4.171 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.178 1.178 7 C -0.475 4.475 8 H 0.087 0.913 9 N -0.202 5.202 10 C -0.038 4.038 11 C 0.051 3.949 12 H 0.155 0.845 13 O -0.387 6.387 14 C -0.214 4.214 15 C 0.222 3.778 16 O -0.493 6.493 17 H 0.087 0.913 18 H 0.092 0.908 19 H 0.118 0.882 20 H 0.251 0.749 21 H 0.144 0.856 22 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.460 -2.272 0.398 14.643 hybrid contribution -0.131 0.785 -0.377 0.880 sum 14.329 -1.487 0.021 14.406 Atomic orbital electron populations 1.69853 1.07962 1.29167 1.47159 1.26017 0.95686 1.02356 0.93004 0.85594 0.79493 0.79287 0.77386 1.20626 1.21644 1.17830 1.18739 0.87184 0.95471 1.46127 0.91348 1.44189 1.08278 1.43141 1.24618 1.22484 0.87825 0.97054 0.96405 1.22786 0.98988 0.82762 0.90334 0.84487 1.86547 1.60930 1.41606 1.49611 1.23065 0.92075 1.01761 1.04490 1.21867 0.92294 0.83029 0.80623 1.90529 1.65539 1.42012 1.51259 0.91331 0.90792 0.88227 0.74856 0.85596 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.38 13.96 21.66 0.30 -58.08 14 2 C 0.03 2.11 5.09 84.92 0.43 2.55 14 3 Si 0.96 51.14 25.00 68.60 1.72 52.85 14 4 H -0.28 -16.15 6.34 99.48 0.63 -15.52 14 5 H -0.29 -14.57 7.11 99.48 0.71 -13.87 14 6 H -0.25 -12.34 7.11 99.48 0.71 -11.64 14 7 C -0.35 -21.03 10.22 84.04 0.86 -20.17 14 8 H 0.07 4.37 8.06 -2.91 -0.02 4.35 14 9 N -0.48 -24.10 2.59 -631.99 -1.64 -25.74 14 10 C 0.08 2.99 7.01 86.84 0.61 3.60 14 11 C 0.11 2.78 4.53 31.65 0.14 2.93 14 12 H 0.14 1.98 8.14 -2.39 -0.02 1.96 14 13 O -0.58 -14.98 13.42 -148.98 -2.00 -16.98 14 14 C -0.17 -5.31 6.61 30.59 0.20 -5.11 14 15 C 0.43 21.12 6.33 87.90 0.56 21.68 14 16 O -0.61 -35.92 13.70 -3.06 -0.04 -35.97 14 17 H 0.28 16.69 8.31 -92.71 -0.77 15.92 14 18 H 0.07 2.67 8.11 -2.39 -0.02 2.65 14 19 H 0.10 2.98 8.14 -2.39 -0.02 2.96 14 20 H 0.40 5.72 9.12 -74.05 -0.68 5.04 14 21 H 0.13 3.12 8.14 -2.39 -0.02 3.10 14 22 H 0.12 3.06 8.11 -2.39 -0.02 3.04 14 Total: -1.00 -82.06 195.13 1.62 -80.44 By element: Atomic # 1 Polarization: -2.47 SS G_CDS: 0.48 Total: -2.00 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 2.80 Total: 5.46 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.34 Total: -83.82 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -2.04 Total: -52.94 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.72 Total: 52.85 kcal Total: -82.06 1.62 -80.44 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075527387.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.344 kcal (2) G-P(sol) polarization free energy of solvation -82.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds