Wall clock time and date at job start Mon Mar 30 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 120.00321 * 2 1 4 4 H 1.48501 * 109.47090 * 270.00256 * 3 2 1 5 5 H 1.48492 * 109.47092 * 30.00042 * 3 2 1 6 6 H 1.48499 * 109.47176 * 150.00488 * 3 2 1 7 7 C 1.38952 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99616 * 188.57719 * 7 2 1 9 9 N 1.37099 * 120.00301 * 8.58011 * 7 2 1 10 10 C 1.46760 * 124.34720 * 14.16731 * 9 7 2 11 11 C 1.54476 * 105.53304 * 163.21145 * 10 9 7 12 12 H 1.09000 * 111.00248 * 267.07405 * 11 10 9 13 13 O 1.42902 * 110.96968 * 143.32542 * 11 10 9 14 14 C 1.54624 * 101.76410 * 25.20748 * 11 10 9 15 15 C 1.34413 * 124.34858 * 193.99159 * 9 7 2 16 16 O 1.21291 * 124.94673 * 0.42920 * 15 9 7 17 17 H 0.96995 * 119.99322 * 359.97438 * 1 2 3 18 18 H 1.09002 * 110.39247 * 44.09803 * 10 9 7 19 19 H 1.08996 * 110.04096 * 282.14177 * 10 9 7 20 20 H 0.96690 * 114.00733 * 186.17032 * 13 11 10 21 21 H 1.09007 * 110.48786 * 216.51786 * 14 11 10 22 22 H 1.09009 * 110.59788 * 93.93462 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4458 2.6526 0.7000 6 1 3.5459 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0798 -1.2087 0.1390 9 7 1.3348 -2.3840 -0.1782 10 6 -0.0457 -2.4840 -0.6661 11 6 -0.2229 -3.9536 -1.1079 12 1 -0.0037 -4.0716 -2.1691 13 8 -1.5379 -4.4237 -0.8046 14 6 0.8358 -4.6733 -0.2407 15 6 1.8546 -3.5987 0.0689 16 8 2.9755 -3.8032 0.4846 17 1 -0.4849 0.8401 0.0004 18 1 -0.1988 -1.8145 -1.5126 19 1 -0.7437 -2.2444 0.1361 20 1 -1.6679 -5.3663 -0.9763 21 1 1.2976 -5.4872 -0.7998 22 1 0.3870 -5.0497 0.6786 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075527391.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:48 Heat of formation + Delta-G solvation = -105.727948 kcal Electronic energy + Delta-G solvation = -10055.507787 eV Core-core repulsion = 7995.671254 eV Total energy + Delta-G solvation = -2059.836533 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.08648 -37.91744 -36.62079 -34.33571 -31.53651 -28.16659 -26.80135 -22.56173 -21.21498 -19.21823 -18.36282 -17.46584 -16.41310 -16.14506 -15.73067 -14.97307 -14.62840 -14.18446 -13.93564 -13.45432 -12.91169 -12.71434 -12.54963 -12.16544 -11.65861 -11.35528 -11.05336 -10.38969 -9.90216 -8.42981 -6.05565 1.34912 1.39504 1.53104 1.89547 2.22759 2.90676 3.07520 3.35356 3.66298 3.78704 4.13764 4.55941 4.77584 4.83430 5.08803 5.28968 5.33290 5.86099 6.37715 6.95319 7.04353 7.24088 7.94204 8.61874 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.061714 B = 0.017262 C = 0.013869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.594317 B = 1621.629657 C = 2018.438097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.003 4.003 3 Si 1.001 2.999 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.352 4.352 8 H 0.081 0.919 9 N -0.455 5.455 10 C 0.143 3.857 11 C 0.102 3.898 12 H 0.098 0.902 13 O -0.564 6.564 14 C -0.162 4.162 15 C 0.422 3.578 16 O -0.638 6.638 17 H 0.278 0.722 18 H 0.066 0.934 19 H 0.058 0.942 20 H 0.402 0.598 21 H 0.118 0.882 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 -4.378 -4.036 7.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.205 4.205 3 Si 0.823 3.177 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.479 4.479 8 H 0.099 0.901 9 N -0.174 5.174 10 C 0.020 3.980 11 C 0.042 3.958 12 H 0.116 0.884 13 O -0.372 6.372 14 C -0.202 4.202 15 C 0.212 3.788 16 O -0.528 6.528 17 H 0.087 0.913 18 H 0.084 0.916 19 H 0.076 0.924 20 H 0.253 0.747 21 H 0.136 0.864 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.791 -3.624 -3.674 6.403 hybrid contribution 0.500 0.330 0.080 0.605 sum -3.291 -3.294 -3.593 5.881 Atomic orbital electron populations 1.70022 1.06867 1.29097 1.47543 1.26223 0.96648 1.02672 0.94979 0.84827 0.77771 0.76070 0.79028 1.18845 1.19478 1.19722 1.19703 0.92822 0.83774 1.51560 0.90141 1.44228 1.12905 1.05382 1.54846 1.21607 0.82869 0.94030 0.99537 1.22676 0.82210 0.92763 0.98142 0.88385 1.86479 1.28983 1.31783 1.89964 1.22891 0.96403 0.97755 1.03181 1.21277 0.88753 0.85673 0.83110 1.90473 1.23135 1.84972 1.54187 0.91252 0.91551 0.92360 0.74696 0.86420 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.56 10.63 21.66 0.23 -48.33 14 2 C 0.00 -0.17 5.40 84.93 0.46 0.29 14 3 Si 1.00 42.49 29.56 68.60 2.03 44.52 14 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 14 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 14 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 14 7 C -0.35 -20.57 9.83 84.04 0.83 -19.74 14 8 H 0.08 4.93 7.74 -2.91 -0.02 4.90 14 9 N -0.46 -24.78 3.05 -631.99 -1.93 -26.71 14 10 C 0.14 6.69 5.12 86.83 0.44 7.14 14 11 C 0.10 3.45 4.54 31.65 0.14 3.59 14 12 H 0.10 2.81 8.14 -2.39 -0.02 2.79 14 13 O -0.56 -16.27 13.41 -148.98 -2.00 -18.27 14 14 C -0.16 -5.79 6.61 30.59 0.20 -5.59 14 15 C 0.42 21.86 7.97 87.90 0.70 22.56 14 16 O -0.64 -38.12 17.62 -3.06 -0.05 -38.17 14 17 H 0.28 13.95 8.31 -92.71 -0.77 13.18 14 18 H 0.07 3.23 7.55 -2.39 -0.02 3.21 14 19 H 0.06 3.00 7.50 -2.39 -0.02 2.98 14 20 H 0.40 6.55 9.11 -74.06 -0.67 5.88 14 21 H 0.12 3.42 8.14 -2.38 -0.02 3.40 14 22 H 0.11 3.60 8.11 -2.38 -0.02 3.58 14 Total: -1.00 -71.45 199.66 1.61 -69.84 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.56 Total: 8.88 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 2.78 Total: 8.24 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.70 Total: -75.04 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.05 Total: -56.44 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.45 1.61 -69.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075527391.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.884 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds