Wall clock time and date at job start Mon Mar 30 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.24569 * 2 1 4 4 O 1.44386 * 110.21035 * 121.88675 * 2 1 3 5 5 C 1.44672 * 104.03016 * 158.81069 * 4 2 1 6 6 C 1.54439 * 103.65140 * 321.82084 * 5 4 2 7 7 N 1.48020 * 110.21080 * 238.11563 * 2 1 3 8 8 C 1.46902 * 110.99623 * 95.79320 * 7 2 1 9 9 C 1.50706 * 109.46577 * 187.29579 * 8 7 2 10 10 H 1.07995 * 120.00167 * 359.72326 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47474 * 90.00322 * 13 11 9 15 15 H 1.48507 * 109.46754 * 210.00056 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99887 * 13 11 9 17 17 H 1.09000 * 109.47424 * 181.88532 * 1 2 3 18 18 H 1.09003 * 109.47065 * 301.88446 * 1 2 3 19 19 H 1.08998 * 109.47462 * 61.88334 * 1 2 3 20 20 H 1.08997 * 110.58894 * 203.27540 * 5 4 2 21 21 H 1.09000 * 110.71538 * 80.42495 * 5 4 2 22 22 H 1.08997 * 110.39035 * 263.90414 * 6 5 4 23 23 H 1.09000 * 110.39403 * 141.51858 * 6 5 4 24 24 H 1.09000 * 109.47263 * 67.29779 * 8 7 2 25 25 H 1.09001 * 109.47582 * 307.29059 * 8 7 2 26 26 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9072 1.0227 0.0000 4 8 2.0288 -0.7157 1.1505 5 6 3.3780 -1.0816 0.7781 6 6 3.2582 -1.4411 -0.7191 7 7 2.0413 -0.7337 -1.1795 8 6 2.3531 0.1892 -2.2790 9 6 2.6980 -0.6007 -3.5153 10 1 2.6910 -1.6802 -3.4857 11 6 3.0284 0.0550 -4.6823 12 7 3.0431 1.3696 -4.7165 13 14 3.4552 -0.9241 -6.2148 14 1 2.2204 -1.1783 -6.9998 15 1 4.4179 -0.1535 -7.0423 16 1 4.0666 -2.2187 -5.8209 17 1 -0.3634 -1.0271 0.0338 18 1 -0.3633 0.5428 0.8726 19 1 -0.3634 0.4843 -0.9064 20 1 3.7141 -1.9440 1.3537 21 1 4.0578 -0.2409 0.9172 22 1 3.1413 -2.5176 -0.8429 23 1 4.1325 -1.0878 -1.2657 24 1 3.2009 0.8146 -1.9992 25 1 1.4872 0.8199 -2.4807 26 1 3.2760 1.8308 -5.5374 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075527785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:18 Heat of formation + Delta-G solvation = -39.058940 kcal Electronic energy + Delta-G solvation = -10188.821291 eV Core-core repulsion = 8267.708838 eV Total energy + Delta-G solvation = -1921.112453 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.20209 -34.23269 -32.21169 -31.00867 -27.90837 -25.81551 -22.77246 -21.75095 -20.12982 -16.28263 -15.94871 -15.42229 -15.00352 -14.38934 -13.40093 -12.78909 -12.51946 -12.13816 -11.98864 -11.57570 -11.47342 -10.99366 -10.74711 -10.63591 -10.26535 -9.95342 -9.50272 -9.26257 -8.49523 -7.48188 -6.08341 -4.10331 3.29812 3.35637 3.39466 4.34984 4.38580 4.86733 5.26171 5.41762 5.43362 5.65472 5.74474 5.89568 6.09336 6.15320 6.45298 6.49368 6.60500 6.77124 7.12065 7.30307 7.71351 7.94580 8.11362 8.40887 8.97525 9.54454 11.02644 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.072332 B = 0.012768 C = 0.011864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.009757 B = 2192.526253 C = 2359.423928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.218 3.782 3 H 0.043 0.957 4 O -0.382 6.382 5 C 0.027 3.973 6 C 0.019 3.981 7 N -0.529 5.529 8 C 0.186 3.814 9 C -0.509 4.509 10 H 0.064 0.936 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.901 3.099 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.273 1.273 17 H 0.065 0.935 18 H 0.054 0.946 19 H 0.071 0.929 20 H 0.089 0.911 21 H 0.055 0.945 22 H 0.076 0.924 23 H 0.073 0.927 24 H -0.006 1.006 25 H 0.033 0.967 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -2.700 6.901 7.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.060 0.940 4 O -0.299 6.299 5 C -0.051 4.051 6 C -0.109 4.109 7 N -0.260 5.260 8 C 0.061 3.939 9 C -0.547 4.547 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.729 3.271 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.198 1.198 17 H 0.084 0.916 18 H 0.073 0.927 19 H 0.090 0.910 20 H 0.108 0.892 21 H 0.073 0.927 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.012 0.988 25 H 0.051 0.949 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.747 -2.939 6.805 7.450 hybrid contribution 1.030 0.282 -0.838 1.358 sum 0.283 -2.657 5.967 6.538 Atomic orbital electron populations 1.21607 0.92720 1.02776 1.01475 1.23870 0.95677 0.92845 0.80439 0.93997 1.89198 1.27361 1.75359 1.37933 1.23859 0.84905 0.99728 0.96638 1.23477 0.94166 1.00515 0.92760 1.64889 1.26804 1.27918 1.06367 1.19950 0.95563 0.90576 0.87808 1.21109 1.45701 0.93574 0.94325 0.91783 1.25005 0.95595 0.94947 0.99082 1.69956 1.48993 1.07010 1.27824 0.86451 0.78243 0.79858 0.82590 1.20532 1.21276 1.19819 0.91604 0.92729 0.90985 0.89244 0.92699 0.90610 0.90825 0.98777 0.94861 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.97 37.16 0.37 -1.85 15 2 C 0.22 4.35 3.53 -3.21 -0.01 4.34 15 3 H 0.04 0.86 7.79 -51.93 -0.40 0.46 15 4 O -0.38 -7.34 11.46 -35.23 -0.40 -7.75 15 5 C 0.03 0.45 7.74 37.91 0.29 0.74 15 6 C 0.02 0.38 6.67 -2.41 -0.02 0.37 15 7 N -0.53 -11.99 5.01 -230.07 -1.15 -13.14 15 8 C 0.19 4.89 4.27 -4.97 -0.02 4.87 15 9 C -0.51 -14.33 8.66 -34.44 -0.30 -14.63 15 10 H 0.06 1.80 7.78 -52.49 -0.41 1.39 15 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 15 12 N -0.90 -26.53 13.29 55.43 0.74 -25.80 15 13 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 15 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 17 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 20 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 21 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 23 H 0.07 1.53 7.36 -51.93 -0.38 1.15 15 24 H -0.01 -0.15 7.99 -51.93 -0.41 -0.57 15 25 H 0.03 0.92 8.11 -51.93 -0.42 0.50 15 26 H 0.26 7.30 8.31 -40.82 -0.34 6.97 15 LS Contribution 223.10 15.07 3.36 3.36 Total: -1.00 -30.00 223.10 -5.96 -35.96 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -3.70 Total: -4.48 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 0.22 Total: -4.70 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.42 Total: -38.94 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.40 Total: -7.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.00 -5.96 -35.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075527785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.096 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds