Wall clock time and date at job start Mon Mar 30 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.24569 * 2 1 4 4 O 1.44386 * 110.21035 * 121.88675 * 2 1 3 5 5 C 1.44672 * 104.03016 * 158.81069 * 4 2 1 6 6 C 1.54439 * 103.65140 * 321.82084 * 5 4 2 7 7 N 1.48020 * 110.21080 * 238.11563 * 2 1 3 8 8 C 1.46902 * 110.99623 * 95.79320 * 7 2 1 9 9 C 1.50706 * 109.46577 * 187.29579 * 8 7 2 10 10 H 1.07995 * 120.00167 * 359.72326 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47474 * 90.00322 * 13 11 9 15 15 H 1.48507 * 109.46754 * 210.00056 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99887 * 13 11 9 17 17 H 1.09000 * 109.47424 * 181.88532 * 1 2 3 18 18 H 1.09003 * 109.47065 * 301.88446 * 1 2 3 19 19 H 1.08998 * 109.47462 * 61.88334 * 1 2 3 20 20 H 1.08997 * 110.58894 * 203.27540 * 5 4 2 21 21 H 1.09000 * 110.71538 * 80.42495 * 5 4 2 22 22 H 1.08997 * 110.39035 * 263.90414 * 6 5 4 23 23 H 1.09000 * 110.39403 * 141.51858 * 6 5 4 24 24 H 1.09000 * 109.47263 * 67.29779 * 8 7 2 25 25 H 1.09001 * 109.47582 * 307.29059 * 8 7 2 26 26 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9072 1.0227 0.0000 4 8 2.0288 -0.7157 1.1505 5 6 3.3780 -1.0816 0.7781 6 6 3.2582 -1.4411 -0.7191 7 7 2.0413 -0.7337 -1.1795 8 6 2.3531 0.1892 -2.2790 9 6 2.6980 -0.6007 -3.5153 10 1 2.6910 -1.6802 -3.4857 11 6 3.0284 0.0550 -4.6823 12 7 3.0431 1.3696 -4.7165 13 14 3.4552 -0.9241 -6.2148 14 1 2.2204 -1.1783 -6.9998 15 1 4.4179 -0.1535 -7.0423 16 1 4.0666 -2.2187 -5.8209 17 1 -0.3634 -1.0271 0.0338 18 1 -0.3633 0.5428 0.8726 19 1 -0.3634 0.4843 -0.9064 20 1 3.7141 -1.9440 1.3537 21 1 4.0578 -0.2409 0.9172 22 1 3.1413 -2.5176 -0.8429 23 1 4.1325 -1.0878 -1.2657 24 1 3.2009 0.8146 -1.9992 25 1 1.4872 0.8199 -2.4807 26 1 3.2760 1.8308 -5.5374 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075527785.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:18 Heat of formation + Delta-G solvation = -61.789213 kcal Electronic energy + Delta-G solvation = -10189.806950 eV Core-core repulsion = 8267.708838 eV Total energy + Delta-G solvation = -1922.098112 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.79476 -36.09245 -34.23158 -32.48852 -29.75449 -27.60520 -24.63944 -23.36772 -21.83543 -18.44691 -17.60990 -17.02155 -16.52071 -16.31459 -15.05386 -14.56736 -14.31921 -13.99986 -13.58551 -13.14560 -13.07245 -12.79373 -12.47413 -12.28971 -12.10571 -11.88371 -11.35565 -10.97859 -10.65182 -9.29605 -8.24839 -6.35688 1.41186 1.42702 1.53869 2.38236 2.87119 3.07892 3.18353 3.90040 4.02091 4.13574 4.24572 4.50220 4.58280 4.78790 4.90476 4.94712 5.03567 5.04031 5.21478 5.48524 5.60525 5.93840 6.26827 6.37995 6.79110 7.34535 8.86549 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.072332 B = 0.012768 C = 0.011864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.009757 B = 2192.526253 C = 2359.423928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.213 3.787 3 H 0.034 0.966 4 O -0.384 6.384 5 C 0.031 3.969 6 C 0.014 3.986 7 N -0.542 5.542 8 C 0.204 3.796 9 C -0.527 4.527 10 H 0.062 0.938 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.264 1.264 17 H 0.066 0.934 18 H 0.081 0.919 19 H 0.063 0.937 20 H 0.127 0.873 21 H 0.064 0.936 22 H 0.086 0.914 23 H 0.058 0.942 24 H -0.031 1.031 25 H 0.009 0.991 26 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -3.811 7.163 8.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.052 0.948 4 O -0.301 6.301 5 C -0.046 4.046 6 C -0.115 4.115 7 N -0.272 5.272 8 C 0.077 3.923 9 C -0.565 4.565 10 H 0.080 0.920 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.797 3.203 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.188 1.188 17 H 0.085 0.915 18 H 0.100 0.900 19 H 0.082 0.918 20 H 0.145 0.855 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.076 0.924 24 H -0.013 1.013 25 H 0.027 0.973 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.590 -4.060 7.093 8.194 hybrid contribution 0.995 0.633 -0.859 1.459 sum 0.405 -3.427 6.234 7.125 Atomic orbital electron populations 1.21582 0.90779 1.03238 1.02390 1.23950 0.97160 0.92248 0.79894 0.94826 1.89196 1.28473 1.75177 1.37261 1.24004 0.84157 1.01598 0.94824 1.23552 0.92499 1.00678 0.94729 1.64850 1.28163 1.27347 1.06875 1.19578 0.93346 0.90401 0.88930 1.21382 1.46094 0.93618 0.95394 0.91988 1.25928 0.95164 0.95975 1.02453 1.70074 1.49585 1.08695 1.28924 0.85331 0.78202 0.78532 0.78241 1.19814 1.20602 1.18836 0.91453 0.89973 0.91794 0.85481 0.91786 0.89533 0.92394 1.01290 0.97266 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 9.97 71.98 0.72 -3.39 15 2 C 0.21 8.38 3.53 86.09 0.30 8.69 15 3 H 0.03 1.39 7.79 -2.39 -0.02 1.37 15 4 O -0.38 -13.97 11.46 -148.98 -1.71 -15.68 15 5 C 0.03 0.99 7.74 72.47 0.56 1.55 15 6 C 0.01 0.52 6.67 86.56 0.58 1.10 15 7 N -0.54 -24.52 5.01 -980.34 -4.91 -29.43 15 8 C 0.20 10.96 4.27 85.56 0.37 11.33 15 9 C -0.53 -29.94 8.66 25.60 0.22 -29.72 15 10 H 0.06 3.47 7.78 -2.91 -0.02 3.45 15 11 C 0.00 0.18 5.46 84.66 0.46 0.64 15 12 N -0.93 -55.67 13.29 21.45 0.28 -55.38 15 13 Si 0.97 43.92 29.54 68.60 2.03 45.95 15 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 15 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 15 17 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 18 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 19 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 20 H 0.13 3.08 8.14 -2.39 -0.02 3.06 15 21 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.09 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.06 2.41 7.36 -2.39 -0.02 2.40 15 24 H -0.03 -1.76 7.99 -2.39 -0.02 -1.78 15 25 H 0.01 0.53 8.11 -2.39 -0.02 0.51 15 26 H 0.27 14.89 8.31 -92.71 -0.77 14.11 15 Total: -1.00 -63.17 223.10 0.04 -63.14 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 1.14 Total: 1.21 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 3.21 Total: -9.80 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -4.63 Total: -84.82 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.71 Total: -15.68 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -63.17 0.04 -63.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075527785.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.346 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds