Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00154 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.27492 * 325.69995 * 11 10 9 13 13 C 1.54592 * 110.31004 * 203.61000 * 11 10 9 14 14 C 1.55104 * 102.84596 * 219.18485 * 13 11 10 15 15 N 1.48529 * 103.28536 * 37.30750 * 14 13 11 16 16 C 1.47902 * 105.81716 * 320.84784 * 15 14 13 17 17 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 18 18 H 1.09001 * 109.47363 * 299.99145 * 9 7 2 19 19 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 20 20 H 1.00897 * 111.00085 * 56.04339 * 10 9 7 21 21 H 1.08998 * 110.72696 * 337.48451 * 13 11 10 22 22 H 1.09004 * 110.72688 * 100.76737 * 13 11 10 23 23 H 1.09001 * 110.59493 * 278.86872 * 14 13 11 24 24 H 1.09007 * 110.82345 * 155.84906 * 14 13 11 25 25 H 1.00895 * 110.99994 * 200.33120 * 15 14 13 26 26 H 1.09009 * 109.91382 * 265.97675 * 16 15 14 27 27 H 1.09001 * 109.91652 * 144.68481 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 7 2.2054 -3.6158 -0.0170 11 6 1.5051 -4.9070 -0.0243 12 1 0.5820 -4.8392 0.5512 13 6 2.4164 -6.0149 0.5518 14 6 2.1055 -7.2278 -0.3636 15 7 1.9312 -6.6091 -1.7026 16 6 1.2030 -5.3430 -1.4700 17 1 -0.4850 0.8401 0.0040 18 1 0.6240 -2.5614 0.8771 19 1 0.6246 -2.5525 -0.9029 20 1 2.8397 -3.5525 0.7651 21 1 3.4658 -5.7313 0.4725 22 1 2.1518 -6.2328 1.5865 23 1 1.1876 -7.7226 -0.0459 24 1 2.9378 -7.9317 -0.3703 25 1 1.4116 -7.2176 -2.3172 26 1 0.1317 -5.5028 -1.5934 27 1 1.5503 -4.5812 -2.1679 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078676436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -1.694739 kcal Electronic energy + Delta-G solvation = -9770.475915 eV Core-core repulsion = 7948.702356 eV Total energy + Delta-G solvation = -1821.773558 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.24122 -34.32095 -32.20786 -29.33042 -27.87026 -25.39782 -22.03115 -20.91074 -19.64398 -16.58071 -16.27965 -15.31283 -14.62825 -13.73049 -13.38382 -13.02195 -12.41607 -11.93869 -11.74931 -11.37200 -11.29843 -10.83419 -10.72727 -10.60133 -10.34319 -9.82315 -9.15517 -8.47148 -8.25911 -7.28878 -6.01895 -4.03847 3.35214 3.38734 3.42340 4.44381 4.53599 5.03787 5.09055 5.18446 5.34066 5.46358 5.70498 5.93759 5.97680 6.10552 6.24366 6.37800 6.60823 7.05627 7.28462 7.42632 7.54989 7.81435 8.15375 8.42020 8.63844 9.05505 9.61083 11.09281 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.105031 B = 0.009610 C = 0.009396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 266.524214 B = 2912.849491 C = 2979.139223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.678 5.678 11 C 0.076 3.924 12 H 0.039 0.961 13 C -0.126 4.126 14 C 0.040 3.960 15 N -0.670 5.670 16 C 0.049 3.951 17 H 0.262 0.738 18 H -0.015 1.015 19 H 0.028 0.972 20 H 0.330 0.670 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.329 0.671 26 H 0.031 0.969 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 -10.507 0.348 10.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.310 5.310 11 C -0.036 4.036 12 H 0.057 0.943 13 C -0.165 4.165 14 C -0.090 4.090 15 N -0.298 5.298 16 C -0.080 4.080 17 H 0.071 0.929 18 H 0.003 0.997 19 H 0.046 0.954 20 H 0.148 0.852 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.144 0.856 26 H 0.049 0.951 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.622 -10.063 -0.408 10.407 hybrid contribution -1.002 0.598 1.111 1.611 sum 1.621 -9.464 0.703 9.628 Atomic orbital electron populations 1.69958 1.06113 1.26887 1.50916 1.24996 0.94879 0.99389 0.95314 0.86525 0.79402 0.82575 0.78680 1.21368 1.20269 1.20102 1.21167 0.93528 0.90269 1.50376 0.91960 1.19609 0.90626 0.87493 0.95643 1.60744 1.20824 1.00643 1.48743 1.22286 0.95567 0.91216 0.94493 0.94286 1.22732 1.01344 0.94617 0.97785 1.22984 0.99635 0.96581 0.89819 1.63079 1.50307 1.05761 1.10673 1.22773 0.94673 0.92233 0.98347 0.92875 0.99732 0.95421 0.85245 0.89976 0.91698 0.94719 0.90551 0.85598 0.95073 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.49 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 15 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 15 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 9 C 0.19 5.17 5.28 -4.97 -0.03 5.15 15 10 N -0.68 -15.07 6.17 -106.56 -0.66 -15.72 15 11 C 0.08 1.41 3.31 -66.36 -0.22 1.19 15 12 H 0.04 0.76 7.84 -51.93 -0.41 0.35 15 13 C -0.13 -1.90 6.53 -24.78 -0.16 -2.06 15 14 C 0.04 0.52 7.55 -1.81 -0.01 0.51 15 15 N -0.67 -10.04 7.51 -109.98 -0.83 -10.87 15 16 C 0.05 0.87 7.28 -2.75 -0.02 0.85 15 17 H 0.26 7.47 8.31 -40.82 -0.34 7.14 15 18 H -0.02 -0.43 8.07 -51.93 -0.42 -0.85 15 19 H 0.03 0.80 8.14 -51.93 -0.42 0.37 15 20 H 0.33 6.99 8.35 -39.29 -0.33 6.66 15 21 H 0.08 1.28 7.98 -51.93 -0.41 0.86 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.33 4.11 8.92 -39.29 -0.35 3.76 15 26 H 0.03 0.51 8.14 -51.92 -0.42 0.09 15 27 H 0.09 1.87 7.93 -51.93 -0.41 1.46 15 LS Contribution 228.46 15.07 3.44 3.44 Total: -1.00 -30.44 228.46 -7.17 -37.61 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.99 Total: 3.13 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -0.86 Total: -8.05 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.75 Total: -53.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.44 -7.17 -37.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078676436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.918 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds