Wall clock time and date at job start Mon Mar 30 2020 01:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48503 * 109.46756 * 269.99709 * 3 2 1 5 5 H 1.48502 * 109.47130 * 29.99571 * 3 2 1 6 6 H 1.48494 * 109.47505 * 149.99758 * 3 2 1 7 7 C 1.37879 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99903 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00120 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00110 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.76608 * 36.74635 * 11 10 9 13 13 C 1.55398 * 110.84678 * 160.01108 * 11 10 9 14 14 C 1.54916 * 101.74107 * 153.86193 * 13 11 10 15 15 N 1.47843 * 104.79337 * 323.02060 * 14 13 11 16 16 C 1.47439 * 108.57210 * 24.09642 * 15 14 13 17 17 H 0.96997 * 120.00522 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47128 * 60.00487 * 9 7 2 19 19 H 1.08996 * 109.47228 * 300.00169 * 9 7 2 20 20 H 1.00905 * 110.99920 * 303.96107 * 10 9 7 21 21 H 1.08995 * 110.87020 * 35.77850 * 13 11 10 22 22 H 1.08997 * 111.05714 * 272.03081 * 13 11 10 23 23 H 1.08996 * 110.37177 * 204.18825 * 14 13 11 24 24 H 1.09002 * 110.37261 * 81.84838 * 14 13 11 25 25 H 1.00906 * 110.99735 * 261.82181 * 15 14 13 26 26 H 1.09002 * 109.88998 * 118.41597 * 16 15 14 27 27 H 1.09003 * 109.88733 * 239.44258 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4697 -2.6180 0.0022 12 1 5.8773 -1.8121 0.6126 13 6 5.9858 -3.9972 0.4985 14 6 7.3692 -4.0837 -0.1933 15 7 7.1672 -3.4637 -1.5201 16 6 6.0188 -2.5427 -1.4381 17 1 -0.4851 0.8400 -0.0004 18 1 3.8745 -0.6800 0.8912 19 1 3.8752 -0.6803 -0.8888 20 1 3.6254 -3.0954 0.7821 21 1 5.3305 -4.8008 0.1627 22 1 6.0903 -4.0089 1.5834 23 1 7.6741 -5.1244 -0.3031 24 1 8.1137 -3.5274 0.3762 25 1 7.0175 -4.1664 -2.2286 26 1 6.3425 -1.5256 -1.6589 27 1 5.2475 -2.8479 -2.1454 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078676439.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:45 Heat of formation + Delta-G solvation = -0.385887 kcal Electronic energy + Delta-G solvation = -9806.641827 eV Core-core repulsion = 7984.925025 eV Total energy + Delta-G solvation = -1821.716802 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.40982 -34.50572 -32.24954 -29.40777 -28.27220 -25.71361 -21.82749 -20.90318 -19.84081 -17.00092 -16.21199 -15.49758 -14.59767 -13.70671 -13.58355 -13.42637 -12.60633 -12.48356 -11.93288 -11.59954 -11.30721 -10.97440 -10.78385 -10.46386 -10.29375 -9.83094 -9.30559 -8.61107 -8.38420 -7.53750 -6.07865 -4.06246 3.28200 3.35204 3.37939 4.37507 4.40895 4.85375 4.88903 5.19149 5.25583 5.43153 5.58464 5.76595 5.86472 6.03326 6.12417 6.35141 6.39741 6.76685 6.94238 7.02779 7.48689 7.58467 7.87801 8.28062 8.62190 8.99490 9.53964 11.05378 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.084100 B = 0.010923 C = 0.010310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.857124 B = 2562.677161 C = 2715.109921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.672 5.672 11 C 0.063 3.937 12 H 0.045 0.955 13 C -0.156 4.156 14 C 0.050 3.950 15 N -0.688 5.688 16 C 0.054 3.946 17 H 0.264 0.736 18 H -0.016 1.016 19 H 0.023 0.977 20 H 0.337 0.663 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.336 0.664 26 H 0.068 0.932 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.166 -5.395 0.173 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.303 5.303 11 C -0.048 4.048 12 H 0.063 0.937 13 C -0.195 4.195 14 C -0.080 4.080 15 N -0.316 5.316 16 C -0.076 4.076 17 H 0.074 0.926 18 H 0.002 0.998 19 H 0.041 0.959 20 H 0.155 0.845 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.151 0.849 26 H 0.086 0.914 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.455 -4.819 -0.443 13.363 hybrid contribution -0.259 0.645 0.966 1.190 sum 12.196 -4.175 0.523 12.902 Atomic orbital electron populations 1.69895 1.06173 1.26939 1.50888 1.24905 0.94753 0.98980 0.94645 0.86820 0.80234 0.83784 0.78679 1.20045 1.21155 1.19283 1.21059 0.88930 0.94827 1.50801 0.90327 1.20045 0.96620 0.84942 0.94804 1.60543 1.03484 1.16943 1.49329 1.22787 0.90634 0.95620 0.95793 0.93732 1.23327 0.97437 0.98157 1.00597 1.22775 0.96462 0.98324 0.90452 1.61772 1.42072 1.21312 1.06431 1.22650 0.90768 0.96961 0.97229 0.92604 0.99794 0.95919 0.84504 0.90567 0.91200 0.91748 0.90892 0.84928 0.91393 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.08 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 15 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 15 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 15 7 C -0.52 -14.99 9.87 -34.44 -0.34 -15.33 15 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 15 9 C 0.16 4.04 4.36 -4.98 -0.02 4.02 15 10 N -0.67 -14.03 6.28 -105.92 -0.67 -14.70 15 11 C 0.06 1.10 3.25 -65.75 -0.21 0.89 15 12 H 0.04 0.81 7.90 -51.93 -0.41 0.40 15 13 C -0.16 -2.14 6.53 -24.45 -0.16 -2.30 15 14 C 0.05 0.61 7.58 -2.29 -0.02 0.59 15 15 N -0.69 -9.49 7.39 -110.79 -0.82 -10.31 15 16 C 0.05 0.88 7.26 -2.84 -0.02 0.86 15 17 H 0.26 7.62 8.31 -40.82 -0.34 7.29 15 18 H -0.02 -0.39 7.15 -51.93 -0.37 -0.76 15 19 H 0.02 0.57 7.55 -51.93 -0.39 0.18 15 20 H 0.34 6.81 8.50 -39.29 -0.33 6.47 15 21 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.34 4.05 8.91 -39.29 -0.35 3.70 15 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.07 1.19 8.03 -51.93 -0.42 0.78 15 LS Contribution 225.28 15.07 3.39 3.39 Total: -1.00 -30.46 225.28 -6.83 -37.29 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -3.98 Total: 3.60 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.87 Total: -9.35 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.71 Total: -52.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.46 -6.83 -37.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078676439.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.904 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds