Wall clock time and date at job start Mon Mar 30 2020 01:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48503 * 109.46756 * 269.99709 * 3 2 1 5 5 H 1.48502 * 109.47130 * 29.99571 * 3 2 1 6 6 H 1.48494 * 109.47505 * 149.99758 * 3 2 1 7 7 C 1.37879 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99903 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00120 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00110 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.76608 * 36.74635 * 11 10 9 13 13 C 1.55398 * 110.84678 * 160.01108 * 11 10 9 14 14 C 1.54916 * 101.74107 * 153.86193 * 13 11 10 15 15 N 1.47843 * 104.79337 * 323.02060 * 14 13 11 16 16 C 1.47439 * 108.57210 * 24.09642 * 15 14 13 17 17 H 0.96997 * 120.00522 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47128 * 60.00487 * 9 7 2 19 19 H 1.08996 * 109.47228 * 300.00169 * 9 7 2 20 20 H 1.00905 * 110.99920 * 303.96107 * 10 9 7 21 21 H 1.08995 * 110.87020 * 35.77850 * 13 11 10 22 22 H 1.08997 * 111.05714 * 272.03081 * 13 11 10 23 23 H 1.08996 * 110.37177 * 204.18825 * 14 13 11 24 24 H 1.09002 * 110.37261 * 81.84838 * 14 13 11 25 25 H 1.00906 * 110.99735 * 261.82181 * 15 14 13 26 26 H 1.09002 * 109.88998 * 118.41597 * 16 15 14 27 27 H 1.09003 * 109.88733 * 239.44258 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4697 -2.6180 0.0022 12 1 5.8773 -1.8121 0.6126 13 6 5.9858 -3.9972 0.4985 14 6 7.3692 -4.0837 -0.1933 15 7 7.1672 -3.4637 -1.5201 16 6 6.0188 -2.5427 -1.4381 17 1 -0.4851 0.8400 -0.0004 18 1 3.8745 -0.6800 0.8912 19 1 3.8752 -0.6803 -0.8888 20 1 3.6254 -3.0954 0.7821 21 1 5.3305 -4.8008 0.1627 22 1 6.0903 -4.0089 1.5834 23 1 7.6741 -5.1244 -0.3031 24 1 8.1137 -3.5274 0.3762 25 1 7.0175 -4.1664 -2.2286 26 1 6.3425 -1.5256 -1.6589 27 1 5.2475 -2.8479 -2.1454 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078676439.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:45 Heat of formation + Delta-G solvation = -25.310734 kcal Electronic energy + Delta-G solvation = -9807.722650 eV Core-core repulsion = 7984.925025 eV Total energy + Delta-G solvation = -1822.797624 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.67037 -36.23182 -34.33021 -30.79906 -29.74642 -27.42683 -23.58240 -22.23331 -21.25003 -19.01885 -17.63216 -16.79907 -16.51450 -15.44822 -15.16831 -14.61357 -14.49232 -14.06664 -13.56806 -13.07105 -12.77055 -12.44117 -12.27087 -12.02320 -11.86206 -11.66781 -11.44923 -10.84309 -9.56625 -9.17270 -8.33645 -6.38707 1.33198 1.34056 1.45210 2.31068 3.00300 3.16989 3.54611 3.67209 4.03175 4.23841 4.38194 4.63021 4.68431 4.74169 4.89902 4.96994 4.99628 5.09500 5.22751 5.49004 5.83000 5.93484 6.44408 6.54181 6.60773 6.71706 7.26662 8.83047 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.084100 B = 0.010923 C = 0.010310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.857124 B = 2562.677161 C = 2715.109921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.176 3.824 10 N -0.678 5.678 11 C 0.055 3.945 12 H 0.039 0.961 13 C -0.147 4.147 14 C 0.053 3.947 15 N -0.688 5.688 16 C 0.058 3.942 17 H 0.269 0.731 18 H -0.015 1.015 19 H 0.023 0.977 20 H 0.339 0.661 21 H 0.075 0.925 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.079 0.921 25 H 0.347 0.653 26 H 0.060 0.940 27 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.311 -5.223 0.336 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.057 0.943 9 C 0.047 3.953 10 N -0.309 5.309 11 C -0.056 4.056 12 H 0.057 0.943 13 C -0.186 4.186 14 C -0.076 4.076 15 N -0.317 5.317 16 C -0.072 4.072 17 H 0.078 0.922 18 H 0.003 0.997 19 H 0.041 0.959 20 H 0.157 0.843 21 H 0.093 0.907 22 H 0.102 0.898 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.163 0.837 26 H 0.078 0.922 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.623 -4.678 -0.284 15.355 hybrid contribution -0.955 0.482 0.910 1.405 sum 13.668 -4.196 0.626 14.311 Atomic orbital electron populations 1.70041 1.08130 1.28334 1.52091 1.25866 0.95640 1.03267 0.94009 0.85671 0.79208 0.78446 0.79344 1.18955 1.20340 1.17735 1.21333 0.91309 0.93529 1.50781 0.94344 1.19769 0.93727 0.87180 0.94576 1.60432 1.06119 1.14728 1.49631 1.22922 0.88102 0.97850 0.96720 0.94271 1.23293 0.98079 0.95572 1.01649 1.22863 0.95465 1.00043 0.89239 1.61734 1.40422 1.21773 1.07739 1.22504 0.91212 0.97328 0.96175 0.92226 0.99722 0.95941 0.84320 0.90676 0.89761 0.88901 0.90284 0.83692 0.92190 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 15 2 C 0.01 0.59 5.47 84.66 0.46 1.06 15 3 Si 0.95 44.64 27.47 68.60 1.88 46.52 15 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 15 7 C -0.53 -31.33 9.87 25.60 0.25 -31.07 15 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 15 9 C 0.18 8.61 4.36 85.56 0.37 8.99 15 10 N -0.68 -28.04 6.28 -489.03 -3.07 -31.11 15 11 C 0.06 1.83 3.25 46.19 0.15 1.98 15 12 H 0.04 1.36 7.90 -2.38 -0.02 1.34 15 13 C -0.15 -3.65 6.53 32.07 0.21 -3.44 15 14 C 0.05 1.12 7.58 86.78 0.66 1.78 15 15 N -0.69 -17.19 7.39 -504.42 -3.73 -20.92 15 16 C 0.06 1.83 7.26 86.65 0.63 2.45 15 17 H 0.27 15.69 8.31 -92.71 -0.77 14.92 15 18 H -0.01 -0.72 7.15 -2.39 -0.02 -0.74 15 19 H 0.02 1.10 7.55 -2.39 -0.02 1.09 15 20 H 0.34 13.65 8.50 -89.69 -0.76 12.88 15 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 25 H 0.35 7.45 8.91 -89.69 -0.80 6.65 15 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 15 27 H 0.05 1.83 8.03 -2.39 -0.02 1.82 15 Total: -1.00 -65.29 225.28 -2.34 -67.64 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.46 Total: 15.40 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 2.73 Total: -18.26 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -6.50 Total: -111.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -65.29 -2.34 -67.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078676439.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.328 kcal (2) G-P(sol) polarization free energy of solvation -65.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds