Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30985 * 1 3 3 Si 1.86809 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47021 * 269.99915 * 3 2 1 5 5 H 1.48497 * 109.46795 * 29.99986 * 3 2 1 6 6 H 1.48499 * 109.47063 * 149.99797 * 3 2 1 7 7 C 1.39861 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00120 * 191.02027 * 7 2 1 9 9 C 1.40129 * 120.00174 * 11.01333 * 7 2 1 10 10 C 1.37899 * 121.75777 * 202.60133 * 9 7 2 11 11 S 1.77320 * 105.10267 * 179.76290 * 10 9 7 12 12 C 1.77231 * 94.72697 * 0.34049 * 11 10 9 13 13 O 1.21711 * 127.04267 * 179.97438 * 12 11 10 14 14 N 1.34174 * 105.92016 * 359.65542 * 12 11 10 15 15 H 0.96997 * 121.12124 * 180.24051 * 14 12 11 16 16 H 0.96995 * 120.00170 * 0.02562 * 1 2 3 17 17 H 1.08001 * 127.45032 * 0.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4914 2.0465 -1.4001 5 1 1.4413 2.6527 0.7000 6 1 3.5414 1.4402 0.7001 7 6 2.0092 -1.2112 0.0005 8 1 3.0743 -1.2198 0.1793 9 6 1.3280 -2.4137 -0.2308 10 6 1.8294 -3.6256 0.1954 11 16 0.6299 -4.8274 -0.3154 12 6 -0.4516 -3.6429 -1.0694 13 8 -1.5092 -3.8673 -1.6284 14 7 0.1308 -2.4473 -0.8916 15 1 -0.2830 -1.6341 -1.2209 16 1 -0.4850 0.8400 -0.0004 17 1 2.7513 -3.8037 0.7292 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082410326.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = -31.202301 kcal Electronic energy + Delta-G solvation = -7808.903253 eV Core-core repulsion = 6059.218171 eV Total energy + Delta-G solvation = -1749.685082 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -38.88653 -36.22143 -33.25485 -29.40037 -26.03751 -22.76774 -19.76542 -18.57844 -16.37145 -15.70839 -15.11798 -14.45130 -13.59845 -13.03291 -12.53337 -11.89560 -11.59066 -11.29503 -10.72705 -10.67885 -9.82060 -9.49684 -8.87369 -8.39343 -7.24114 -6.84888 -4.80022 2.35576 2.59033 2.90199 2.93431 2.95700 3.52782 3.63897 3.74793 4.58800 4.91083 6.72404 6.84829 7.23903 7.44996 7.73172 8.02903 8.28977 8.61221 8.90686 9.80599 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.087514 B = 0.016307 C = 0.014082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.873172 B = 1716.656045 C = 1987.831494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.071 3.929 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.454 4.454 8 H 0.103 0.897 9 C 0.290 3.710 10 C -0.424 4.424 11 S -0.128 6.128 12 C 0.505 3.495 13 O -0.524 6.524 14 N -0.619 5.619 15 H 0.419 0.581 16 H 0.293 0.707 17 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 2.158 0.057 3.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.146 4.146 3 Si 0.756 3.244 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.488 4.488 8 H 0.121 0.879 9 C 0.182 3.818 10 C -0.560 4.560 11 S 0.104 5.896 12 C 0.186 3.814 13 O -0.409 6.409 14 N -0.265 5.265 15 H 0.265 0.735 16 H 0.104 0.896 17 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.306 0.760 -0.092 2.430 hybrid contribution 0.258 2.434 -0.119 2.450 sum 2.564 3.193 -0.212 4.101 Atomic orbital electron populations 1.69372 1.07654 1.30825 1.37411 1.26167 0.95056 1.02450 0.90892 0.85885 0.80135 0.78822 0.79524 1.19020 1.19992 1.18144 1.19063 0.97023 0.88313 1.44417 0.87898 1.16944 0.81998 0.94911 0.87969 1.24408 1.09272 0.89652 1.32666 1.84746 1.22199 1.17079 1.65551 1.22154 0.88563 0.86593 0.84101 1.90775 1.22180 1.79713 1.48273 1.44108 1.21695 1.10037 1.50634 0.73543 0.89599 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.59 10.98 55.55 0.61 -18.98 13 2 C 0.07 1.63 5.36 -17.31 -0.09 1.53 13 3 Si 0.93 17.03 29.58 -169.99 -5.03 12.00 13 4 H -0.27 -4.79 7.11 56.52 0.40 -4.39 13 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 13 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 13 7 C -0.45 -10.97 9.12 -38.27 -0.35 -11.32 13 8 H 0.10 2.34 7.87 -52.48 -0.41 1.92 13 9 C 0.29 7.35 6.28 -85.07 -0.53 6.81 13 10 C -0.42 -10.21 11.47 30.61 0.35 -9.86 13 11 S -0.13 -3.01 23.17 -107.50 -2.49 -5.50 13 12 C 0.50 12.97 9.06 53.79 0.49 13.46 13 13 O -0.52 -14.17 18.05 5.18 0.09 -14.08 13 14 N -0.62 -15.75 4.95 -13.39 -0.07 -15.82 13 15 H 0.42 10.60 6.50 -40.82 -0.27 10.34 13 16 H 0.29 6.31 8.30 -40.82 -0.34 5.97 13 17 H 0.16 3.46 8.06 -52.49 -0.42 3.04 13 LS Contribution 180.07 15.07 2.71 2.71 Total: -1.00 -26.43 180.07 -4.54 -30.97 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -0.24 Total: 8.08 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.14 Total: 0.62 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.54 Total: -34.80 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.49 Total: -5.50 kcal Total LS contribution 2.71 Total: 2.71 kcal Total: -26.43 -4.54 -30.97 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082410326.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.234 kcal (2) G-P(sol) polarization free energy of solvation -26.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds