Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30985 * 1 3 3 Si 1.86809 * 120.00014 * 2 1 4 4 H 1.48504 * 109.47021 * 269.99915 * 3 2 1 5 5 H 1.48497 * 109.46795 * 29.99986 * 3 2 1 6 6 H 1.48499 * 109.47063 * 149.99797 * 3 2 1 7 7 C 1.39861 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00120 * 191.02027 * 7 2 1 9 9 C 1.40129 * 120.00174 * 11.01333 * 7 2 1 10 10 C 1.37899 * 121.75777 * 202.60133 * 9 7 2 11 11 S 1.77320 * 105.10267 * 179.76290 * 10 9 7 12 12 C 1.77231 * 94.72697 * 0.34049 * 11 10 9 13 13 O 1.21711 * 127.04267 * 179.97438 * 12 11 10 14 14 N 1.34174 * 105.92016 * 359.65542 * 12 11 10 15 15 H 0.96997 * 121.12124 * 180.24051 * 14 12 11 16 16 H 0.96995 * 120.00170 * 0.02562 * 1 2 3 17 17 H 1.08001 * 127.45032 * 0.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6178 0.0000 4 1 2.4914 2.0465 -1.4001 5 1 1.4413 2.6527 0.7000 6 1 3.5414 1.4402 0.7001 7 6 2.0092 -1.2112 0.0005 8 1 3.0743 -1.2198 0.1793 9 6 1.3280 -2.4137 -0.2308 10 6 1.8294 -3.6256 0.1954 11 16 0.6299 -4.8274 -0.3154 12 6 -0.4516 -3.6429 -1.0694 13 8 -1.5092 -3.8673 -1.6284 14 7 0.1308 -2.4473 -0.8916 15 1 -0.2830 -1.6341 -1.2209 16 1 -0.4850 0.8400 -0.0004 17 1 2.7513 -3.8037 0.7292 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082410326.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = -48.728494 kcal Electronic energy + Delta-G solvation = -7809.663246 eV Core-core repulsion = 6059.218171 eV Total energy + Delta-G solvation = -1750.445075 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.85242 -38.19058 -35.07851 -31.30738 -27.90152 -24.71421 -21.67939 -20.46014 -18.32483 -17.60944 -16.81935 -16.43621 -15.44270 -14.85660 -14.32708 -13.66174 -13.24080 -13.09856 -12.45237 -12.22183 -11.63238 -11.24408 -10.84521 -10.30241 -9.01002 -8.74811 -6.66277 0.39942 0.72594 1.30155 1.41581 1.57769 1.69979 1.87551 2.17171 2.64787 3.06434 4.84163 5.07061 5.36694 5.53910 5.87634 6.11226 6.44755 6.73430 6.93201 8.08544 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.087514 B = 0.016307 C = 0.014082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.873172 B = 1716.656045 C = 1987.831494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.035 3.965 3 Si 1.009 2.991 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.475 4.475 8 H 0.115 0.885 9 C 0.264 3.736 10 C -0.437 4.437 11 S -0.087 6.087 12 C 0.485 3.515 13 O -0.549 6.549 14 N -0.620 5.620 15 H 0.416 0.584 16 H 0.302 0.698 17 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 3.100 0.404 5.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.180 4.180 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.173 1.173 7 C -0.509 4.509 8 H 0.132 0.868 9 C 0.156 3.844 10 C -0.573 4.573 11 S 0.146 5.854 12 C 0.167 3.833 13 O -0.437 6.437 14 N -0.265 5.265 15 H 0.261 0.739 16 H 0.113 0.887 17 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.366 1.673 0.267 3.768 hybrid contribution -0.073 2.132 -0.201 2.143 sum 3.293 3.805 0.066 5.033 Atomic orbital electron populations 1.69402 1.09192 1.32363 1.36978 1.27108 0.95681 1.05674 0.89527 0.84761 0.78813 0.73939 0.79680 1.18475 1.19535 1.17340 1.19438 0.97738 0.88750 1.44941 0.86759 1.17366 0.82172 0.96078 0.88746 1.24770 1.10055 0.89637 1.32840 1.84520 1.20898 1.15444 1.64536 1.22546 0.88867 0.87332 0.84520 1.90746 1.23135 1.80384 1.49386 1.44191 1.21868 1.09956 1.50488 0.73919 0.88661 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -39.74 10.98 21.82 0.24 -39.50 13 2 C 0.03 1.53 5.36 85.21 0.46 1.99 13 3 Si 1.01 33.15 29.58 68.60 2.03 35.17 13 4 H -0.26 -8.32 7.11 99.48 0.71 -7.61 13 5 H -0.27 -8.66 7.11 99.48 0.71 -7.96 13 6 H -0.25 -7.88 7.11 99.48 0.71 -7.17 13 7 C -0.48 -22.42 9.12 23.12 0.21 -22.21 13 8 H 0.11 4.99 7.87 -2.91 -0.02 4.97 13 9 C 0.26 13.22 6.28 38.75 0.24 13.46 13 10 C -0.44 -20.52 11.47 67.74 0.78 -19.75 13 11 S -0.09 -3.99 23.17 -56.49 -1.31 -5.30 13 12 C 0.48 24.91 9.06 129.89 1.18 26.09 13 13 O -0.55 -29.86 18.05 -4.38 -0.08 -29.94 13 14 N -0.62 -31.56 4.95 -314.81 -1.56 -33.12 13 15 H 0.42 21.19 6.50 -92.71 -0.60 20.59 13 16 H 0.30 12.69 8.30 -92.71 -0.77 11.92 13 17 H 0.17 7.37 8.06 -2.91 -0.02 7.35 13 Total: -1.00 -53.90 180.07 2.89 -51.01 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.70 Total: 22.09 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 2.86 Total: -0.42 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.32 Total: -72.62 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.08 Total: -29.94 kcal Atomic # 14 Polarization: 33.15 SS G_CDS: 2.03 Total: 35.17 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.31 Total: -5.30 kcal Total: -53.90 2.89 -51.01 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082410326.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.286 kcal (2) G-P(sol) polarization free energy of solvation -53.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds