Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47431 * 300.00075 * 3 2 1 6 6 H 1.48505 * 109.47401 * 60.00202 * 3 2 1 7 7 C 1.38812 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99992 * 179.72177 * 7 2 1 9 9 N 1.36933 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64971 * 16.69213 * 9 7 2 11 11 C 1.54905 * 104.83380 * 155.83662 * 10 9 7 12 12 C 1.55148 * 101.58364 * 37.00715 * 11 10 9 13 13 C 1.47019 * 125.65176 * 196.38343 * 9 7 2 14 14 H 1.09008 * 109.87916 * 300.51247 * 13 9 7 15 15 C 1.53001 * 109.88407 * 61.67473 * 13 9 7 16 16 N 1.46898 * 109.47217 * 301.97384 * 15 13 9 17 17 H 0.96991 * 119.99679 * 0.02562 * 1 2 3 18 18 H 1.09003 * 110.36300 * 274.67524 * 10 9 7 19 19 H 1.09000 * 110.36476 * 36.99142 * 10 9 7 20 20 H 1.08998 * 111.00344 * 155.08787 * 11 10 9 21 21 H 1.09004 * 111.00148 * 278.92862 * 11 10 9 22 22 H 1.08998 * 110.71889 * 82.86385 * 12 11 10 23 23 H 1.09004 * 110.72015 * 205.95982 * 12 11 10 24 24 H 1.08999 * 109.46880 * 61.96861 * 15 13 9 25 25 H 1.09000 * 109.47337 * 181.96847 * 15 13 9 26 26 H 1.00900 * 111.00464 * 68.24870 * 16 15 13 27 27 H 1.00895 * 111.00162 * 192.20823 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0051 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0979 -2.5584 -0.3441 11 6 -0.2230 -4.0349 -0.7954 12 6 0.7598 -4.7416 0.1751 13 6 1.8899 -3.7033 0.3359 14 1 2.7111 -3.9385 -0.3412 15 6 2.3887 -3.7010 1.7823 16 7 3.3925 -2.6421 1.9524 17 1 -0.4849 0.8400 -0.0004 18 1 -0.7236 -2.3743 0.5293 19 1 -0.3745 -1.8881 -1.1580 20 1 -1.2403 -4.4010 -0.6565 21 1 0.0958 -4.1554 -1.8308 22 1 0.2783 -4.9443 1.1317 23 1 1.1415 -5.6626 -0.2657 24 1 1.5508 -3.5187 2.4553 25 1 2.8370 -4.6672 2.0137 26 1 2.9711 -1.7285 1.8757 27 1 3.8795 -2.7431 2.8303 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082631491.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = 19.356110 kcal Electronic energy + Delta-G solvation = -10385.831783 eV Core-core repulsion = 8564.971058 eV Total energy + Delta-G solvation = -1820.860725 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.65971 -33.10760 -32.50314 -29.11534 -27.81042 -24.64347 -22.56756 -20.08903 -19.10035 -16.71058 -15.72157 -14.43799 -14.08428 -13.86302 -13.45144 -12.22372 -11.89861 -11.83000 -11.60670 -11.14368 -10.78330 -10.75592 -10.09801 -9.98695 -9.76882 -9.66897 -9.43735 -8.50892 -7.79020 -6.65837 -5.69489 -3.02742 3.41525 3.49051 3.51670 4.54215 5.29295 5.47831 5.67904 5.72603 5.81739 6.10875 6.17101 6.26371 6.42973 6.49904 6.63792 6.76135 6.80508 7.21345 7.61109 7.72984 7.91365 8.06491 8.37103 8.46520 9.29340 9.90391 10.61908 11.43695 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.050690 B = 0.019887 C = 0.015244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.240052 B = 1407.610172 C = 1836.333324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.218 4.218 8 H 0.088 0.912 9 N -0.596 5.596 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.161 3.839 14 H 0.038 0.962 15 C 0.060 3.940 16 N -0.850 5.850 17 H 0.250 0.750 18 H 0.024 0.976 19 H 0.064 0.936 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.015 0.985 25 H 0.046 0.954 26 H 0.365 0.635 27 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -6.085 1.715 6.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.347 4.347 8 H 0.106 0.894 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.053 3.947 14 H 0.055 0.945 15 C -0.073 4.073 16 N -0.384 5.384 17 H 0.061 0.939 18 H 0.042 0.958 19 H 0.082 0.918 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.185 0.815 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.689 -6.136 1.049 6.450 hybrid contribution -0.209 1.160 0.928 1.500 sum 1.479 -4.976 1.977 5.555 Atomic orbital electron populations 1.69967 1.05030 1.24880 1.56727 1.24998 0.95658 0.97823 1.02340 0.86123 0.79134 0.83969 0.77149 1.20163 1.21899 1.21924 1.19232 0.90943 0.81980 1.42568 0.89412 1.44527 1.07055 1.01848 1.78679 1.21380 0.85789 0.89754 0.98377 1.22998 0.97532 0.99839 0.98384 1.22542 0.97341 0.97302 0.99253 1.21018 0.93771 0.86871 0.93024 0.94470 1.22233 0.92893 0.93542 0.98643 1.59029 1.32398 1.08706 1.38273 0.93924 0.95818 0.91756 0.92583 0.92440 0.92213 0.92469 0.96649 0.93529 0.81529 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.66 55.49 0.59 -26.48 15 2 C -0.01 -0.32 5.47 -17.43 -0.10 -0.42 15 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 7 C -0.22 -6.01 7.57 -15.06 -0.11 -6.12 15 8 H 0.09 2.41 6.98 -52.48 -0.37 2.04 15 9 N -0.60 -15.34 3.13 -162.58 -0.51 -15.85 15 10 C 0.17 4.27 5.38 -2.53 -0.01 4.26 15 11 C -0.15 -2.92 7.08 -24.59 -0.17 -3.09 15 12 C -0.13 -2.31 6.47 -24.91 -0.16 -2.47 15 13 C 0.16 3.50 3.51 -66.96 -0.23 3.26 15 14 H 0.04 0.85 8.14 -51.92 -0.42 0.43 15 15 C 0.06 1.20 6.36 -3.82 -0.02 1.18 15 16 N -0.85 -17.27 8.82 -10.37 -0.09 -17.36 15 17 H 0.25 7.18 8.31 -40.82 -0.34 6.84 15 18 H 0.02 0.64 8.01 -51.93 -0.42 0.22 15 19 H 0.06 1.77 7.08 -51.93 -0.37 1.40 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.06 1.04 7.82 -51.93 -0.41 0.64 15 23 H 0.06 0.91 8.14 -51.93 -0.42 0.48 15 24 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.36 8.33 6.13 -39.29 -0.24 8.09 15 27 H 0.31 5.35 9.08 -39.29 -0.36 4.99 15 LS Contribution 217.53 15.07 3.28 3.28 Total: -1.00 -29.48 217.53 -6.39 -35.87 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.82 Total: 6.90 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.82 Total: -3.41 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.01 Total: -59.69 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.48 -6.39 -35.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631491.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.226 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds