Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47431 * 300.00075 * 3 2 1 6 6 H 1.48505 * 109.47401 * 60.00202 * 3 2 1 7 7 C 1.38812 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99992 * 179.72177 * 7 2 1 9 9 N 1.36933 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64971 * 16.69213 * 9 7 2 11 11 C 1.54905 * 104.83380 * 155.83662 * 10 9 7 12 12 C 1.55148 * 101.58364 * 37.00715 * 11 10 9 13 13 C 1.47019 * 125.65176 * 196.38343 * 9 7 2 14 14 H 1.09008 * 109.87916 * 300.51247 * 13 9 7 15 15 C 1.53001 * 109.88407 * 61.67473 * 13 9 7 16 16 N 1.46898 * 109.47217 * 301.97384 * 15 13 9 17 17 H 0.96991 * 119.99679 * 0.02562 * 1 2 3 18 18 H 1.09003 * 110.36300 * 274.67524 * 10 9 7 19 19 H 1.09000 * 110.36476 * 36.99142 * 10 9 7 20 20 H 1.08998 * 111.00344 * 155.08787 * 11 10 9 21 21 H 1.09004 * 111.00148 * 278.92862 * 11 10 9 22 22 H 1.08998 * 110.71889 * 82.86385 * 12 11 10 23 23 H 1.09004 * 110.72015 * 205.95982 * 12 11 10 24 24 H 1.08999 * 109.46880 * 61.96861 * 15 13 9 25 25 H 1.09000 * 109.47337 * 181.96847 * 15 13 9 26 26 H 1.00900 * 111.00464 * 68.24870 * 16 15 13 27 27 H 1.00895 * 111.00162 * 192.20823 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0051 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0979 -2.5584 -0.3441 11 6 -0.2230 -4.0349 -0.7954 12 6 0.7598 -4.7416 0.1751 13 6 1.8899 -3.7033 0.3359 14 1 2.7111 -3.9385 -0.3412 15 6 2.3887 -3.7010 1.7823 16 7 3.3925 -2.6421 1.9524 17 1 -0.4849 0.8400 -0.0004 18 1 -0.7236 -2.3743 0.5293 19 1 -0.3745 -1.8881 -1.1580 20 1 -1.2403 -4.4010 -0.6565 21 1 0.0958 -4.1554 -1.8308 22 1 0.2783 -4.9443 1.1317 23 1 1.1415 -5.6626 -0.2657 24 1 1.5508 -3.5187 2.4553 25 1 2.8370 -4.6672 2.0137 26 1 2.9711 -1.7285 1.8757 27 1 3.8795 -2.7431 2.8303 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082631491.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -1.790665 kcal Electronic energy + Delta-G solvation = -10386.748776 eV Core-core repulsion = 8564.971058 eV Total energy + Delta-G solvation = -1821.777718 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.42259 -34.80976 -34.45165 -31.05804 -29.53189 -26.60144 -24.32517 -21.80257 -20.88562 -18.72602 -17.43690 -16.40621 -15.83481 -15.55426 -15.18882 -14.06620 -13.68495 -13.59451 -13.29510 -12.95800 -12.68139 -12.66426 -11.91759 -11.72320 -11.47224 -11.38123 -11.35020 -10.60667 -9.44029 -8.69865 -7.81762 -5.16439 1.47105 1.48773 1.59602 2.53391 3.33791 3.71161 3.96490 4.09109 4.30885 4.41050 4.60423 4.64664 4.84953 4.94834 5.03896 5.14206 5.26095 5.57144 5.62385 5.70315 5.79952 6.30143 6.48331 6.84456 7.18389 7.86922 8.55645 9.30939 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.050690 B = 0.019887 C = 0.015244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.240052 B = 1407.610172 C = 1836.333324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.215 4.215 8 H 0.087 0.913 9 N -0.615 5.615 10 C 0.174 3.826 11 C -0.136 4.136 12 C -0.114 4.114 13 C 0.149 3.851 14 H 0.030 0.970 15 C 0.064 3.936 16 N -0.857 5.857 17 H 0.244 0.756 18 H -0.006 1.006 19 H 0.026 0.974 20 H 0.082 0.918 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.003 0.997 25 H 0.081 0.919 26 H 0.349 0.651 27 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -7.562 1.994 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.344 4.344 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.049 3.951 11 C -0.174 4.174 12 C -0.152 4.152 13 C 0.042 3.958 14 H 0.048 0.952 15 C -0.069 4.069 16 N -0.390 5.390 17 H 0.053 0.947 18 H 0.012 0.988 19 H 0.045 0.955 20 H 0.101 0.899 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.111 0.889 24 H 0.022 0.978 25 H 0.099 0.901 26 H 0.167 0.833 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.625 -7.659 1.342 8.207 hybrid contribution -0.445 1.560 0.844 1.829 sum 2.180 -6.099 2.186 6.836 Atomic orbital electron populations 1.70167 1.06405 1.24957 1.58594 1.25723 0.96412 1.00909 1.03156 0.85121 0.78536 0.80012 0.76436 1.18835 1.22527 1.22105 1.19438 0.91033 0.83014 1.40934 0.89527 1.44823 1.07378 1.02901 1.78903 1.21192 0.85223 0.92755 0.95930 1.22877 0.99725 0.95865 0.98958 1.22535 0.95564 0.97390 0.99737 1.21286 0.94760 0.85894 0.93839 0.95237 1.22176 0.92702 0.94940 0.97052 1.58967 1.32417 1.07881 1.39762 0.94688 0.98777 0.95530 0.89922 0.91844 0.91009 0.88878 0.97849 0.90099 0.83324 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.74 10.66 21.65 0.23 -57.51 15 2 C -0.07 -3.93 5.47 84.86 0.46 -3.47 15 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 15 4 H -0.26 -11.85 7.11 99.48 0.71 -11.15 15 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 15 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 7 C -0.21 -11.86 7.57 84.03 0.64 -11.23 15 8 H 0.09 4.73 6.98 -2.91 -0.02 4.71 15 9 N -0.61 -31.57 3.13 -668.27 -2.09 -33.66 15 10 C 0.17 8.75 5.38 86.85 0.47 9.22 15 11 C -0.14 -5.03 7.08 31.98 0.23 -4.80 15 12 C -0.11 -3.79 6.47 31.78 0.21 -3.58 15 13 C 0.15 6.16 3.51 45.34 0.16 6.32 15 14 H 0.03 1.28 8.14 -2.38 -0.02 1.26 15 15 C 0.06 2.41 6.36 86.30 0.55 2.96 15 16 N -0.86 -33.33 8.82 -186.72 -1.65 -34.98 15 17 H 0.24 14.45 8.31 -92.72 -0.77 13.68 15 18 H -0.01 -0.32 8.01 -2.39 -0.02 -0.34 15 19 H 0.03 1.50 7.08 -2.39 -0.02 1.48 15 20 H 0.08 2.63 8.14 -2.39 -0.02 2.61 15 21 H 0.06 2.27 8.14 -2.39 -0.02 2.26 15 22 H 0.07 2.23 7.82 -2.39 -0.02 2.21 15 23 H 0.09 2.48 8.14 -2.38 -0.02 2.46 15 24 H 0.00 0.13 8.09 -2.39 -0.02 0.11 15 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 26 H 0.35 15.71 6.13 -89.69 -0.55 15.16 15 27 H 0.33 10.62 9.08 -89.70 -0.81 9.80 15 Total: -1.00 -63.74 217.53 1.02 -62.71 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.20 Total: 19.88 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 2.71 Total: -4.57 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -3.51 Total: -126.15 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -63.74 1.02 -62.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631491.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.923 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds