Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00240 * 2 1 4 4 H 1.48498 * 109.46767 * 239.99762 * 3 2 1 5 5 H 1.48496 * 109.46751 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46976 * 119.99892 * 3 2 1 7 7 C 1.38815 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00510 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.64927 * 342.30045 * 9 7 2 11 11 C 1.54913 * 104.83491 * 204.14644 * 10 9 7 12 12 C 1.55160 * 101.57939 * 322.99155 * 11 10 9 13 13 C 1.47025 * 125.64789 * 162.32272 * 9 7 2 14 14 H 1.08998 * 109.88180 * 59.50469 * 13 9 7 15 15 C 1.53003 * 110.01122 * 298.40959 * 13 9 7 16 16 N 1.46906 * 109.47157 * 60.58171 * 15 13 9 17 17 H 0.97001 * 119.99353 * 0.02562 * 1 2 3 18 18 H 1.09007 * 110.36716 * 85.30902 * 10 9 7 19 19 H 1.08997 * 110.46089 * 323.03660 * 10 9 7 20 20 H 1.08998 * 111.00719 * 204.92049 * 11 10 9 21 21 H 1.09002 * 111.03587 * 81.07461 * 11 10 9 22 22 H 1.08995 * 110.72183 * 277.13730 * 12 11 10 23 23 H 1.09007 * 110.87291 * 153.93111 * 12 11 10 24 24 H 1.09000 * 109.47371 * 180.57757 * 15 13 9 25 25 H 1.08997 * 109.47304 * 300.57987 * 15 13 9 26 26 H 1.00896 * 111.00417 * 171.84110 * 16 15 13 27 27 H 1.00899 * 110.99735 * 295.79284 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.0925 -2.5614 0.3642 11 6 -0.2111 -4.0421 0.8040 12 6 0.7567 -4.7400 -0.1879 13 6 1.8830 -3.6994 -0.3617 14 1 2.7170 -3.9423 0.2966 15 6 2.3564 -3.6833 -1.8166 16 7 3.4023 -2.6647 -1.9800 17 1 -0.4849 0.8401 -0.0004 18 1 -0.7315 -2.3694 -0.4978 19 1 -0.3584 -1.8986 1.1877 20 1 -1.2303 -4.4069 0.6772 21 1 0.1233 -4.1726 1.8332 22 1 0.2607 -4.9338 -1.1388 23 1 1.1481 -5.6645 0.2369 24 1 2.7583 -4.6619 -2.0789 25 1 1.5158 -3.4489 -2.4697 26 1 3.8244 -2.7232 -2.8946 27 1 3.0363 -1.7400 -1.8092 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082631493.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = 18.462697 kcal Electronic energy + Delta-G solvation = -10381.641298 eV Core-core repulsion = 8560.741832 eV Total energy + Delta-G solvation = -1820.899466 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.66159 -33.10784 -32.52196 -29.13375 -27.80641 -24.66008 -22.57271 -20.09757 -19.11531 -16.74615 -15.68602 -14.45937 -14.11927 -13.82899 -13.44582 -12.28353 -11.91486 -11.82886 -11.60274 -11.13279 -10.78628 -10.75248 -10.11686 -10.05562 -9.76025 -9.68545 -9.44898 -8.52688 -7.80317 -6.66834 -5.72113 -3.05906 3.41539 3.46756 3.47924 4.52168 5.29032 5.46764 5.67975 5.71111 5.81488 6.10661 6.18990 6.27243 6.43376 6.49919 6.63722 6.75891 6.80715 7.21525 7.58821 7.71579 7.87272 8.06349 8.35328 8.46236 9.26412 9.87859 10.60347 11.40960 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.050409 B = 0.019873 C = 0.015224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.324120 B = 1408.590602 C = 1838.812171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.225 4.225 8 H 0.085 0.915 9 N -0.596 5.596 10 C 0.173 3.827 11 C -0.148 4.148 12 C -0.125 4.125 13 C 0.160 3.840 14 H 0.038 0.962 15 C 0.060 3.940 16 N -0.854 5.854 17 H 0.252 0.748 18 H 0.025 0.975 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.015 0.985 26 H 0.314 0.686 27 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -5.869 -1.636 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.103 0.897 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.052 3.948 14 H 0.056 0.944 15 C -0.073 4.073 16 N -0.388 5.388 17 H 0.063 0.937 18 H 0.043 0.957 19 H 0.081 0.919 20 H 0.074 0.926 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.124 0.876 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.527 -5.974 -1.013 6.248 hybrid contribution -0.214 1.242 -0.879 1.537 sum 1.313 -4.731 -1.892 5.262 Atomic orbital electron populations 1.69948 1.05056 1.25211 1.56108 1.25022 0.95655 0.97856 1.01990 0.86264 0.78522 0.83311 0.78093 1.21048 1.21772 1.21069 1.19078 0.90748 0.82093 1.43469 0.89702 1.44501 1.07835 1.02130 1.77648 1.21356 0.85881 0.89663 0.98310 1.22993 0.97607 0.99828 0.98286 1.22535 0.97363 0.97300 0.99192 1.21026 0.93958 0.86953 0.92836 0.94438 1.22231 0.92440 0.93970 0.98679 1.59084 1.35446 1.11105 1.33194 0.93741 0.95737 0.91949 0.92561 0.92431 0.92224 0.92427 0.93505 0.96625 0.87618 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.70 55.49 0.59 -26.33 15 2 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 15 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.23 -6.19 7.67 -15.06 -0.12 -6.31 15 8 H 0.09 2.31 6.94 -52.48 -0.36 1.95 15 9 N -0.60 -15.35 3.13 -162.57 -0.51 -15.86 15 10 C 0.17 4.29 5.37 -2.53 -0.01 4.28 15 11 C -0.15 -2.91 7.09 -24.58 -0.17 -3.08 15 12 C -0.13 -2.31 6.48 -24.90 -0.16 -2.47 15 13 C 0.16 3.49 3.48 -66.95 -0.23 3.26 15 14 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 15 C 0.06 1.21 6.34 -3.82 -0.02 1.19 15 16 N -0.85 -17.46 9.12 -10.36 -0.09 -17.56 15 17 H 0.25 7.24 8.31 -40.82 -0.34 6.90 15 18 H 0.02 0.66 7.99 -51.93 -0.41 0.24 15 19 H 0.06 1.71 7.15 -51.93 -0.37 1.34 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.06 1.04 7.85 -51.93 -0.41 0.64 15 23 H 0.06 0.92 8.14 -51.92 -0.42 0.49 15 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 26 H 0.31 5.44 9.08 -39.29 -0.36 5.09 15 27 H 0.37 8.41 5.78 -39.29 -0.23 8.19 15 LS Contribution 217.65 15.07 3.28 3.28 Total: -1.00 -29.31 217.65 -6.38 -35.69 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.81 Total: 7.25 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -0.82 Total: -3.46 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.01 Total: -59.75 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -29.31 -6.38 -35.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631493.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.158 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds