Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00240 * 2 1 4 4 H 1.48498 * 109.46767 * 239.99762 * 3 2 1 5 5 H 1.48496 * 109.46751 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46976 * 119.99892 * 3 2 1 7 7 C 1.38815 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00510 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.64927 * 342.30045 * 9 7 2 11 11 C 1.54913 * 104.83491 * 204.14644 * 10 9 7 12 12 C 1.55160 * 101.57939 * 322.99155 * 11 10 9 13 13 C 1.47025 * 125.64789 * 162.32272 * 9 7 2 14 14 H 1.08998 * 109.88180 * 59.50469 * 13 9 7 15 15 C 1.53003 * 110.01122 * 298.40959 * 13 9 7 16 16 N 1.46906 * 109.47157 * 60.58171 * 15 13 9 17 17 H 0.97001 * 119.99353 * 0.02562 * 1 2 3 18 18 H 1.09007 * 110.36716 * 85.30902 * 10 9 7 19 19 H 1.08997 * 110.46089 * 323.03660 * 10 9 7 20 20 H 1.08998 * 111.00719 * 204.92049 * 11 10 9 21 21 H 1.09002 * 111.03587 * 81.07461 * 11 10 9 22 22 H 1.08995 * 110.72183 * 277.13730 * 12 11 10 23 23 H 1.09007 * 110.87291 * 153.93111 * 12 11 10 24 24 H 1.09000 * 109.47371 * 180.57757 * 15 13 9 25 25 H 1.08997 * 109.47304 * 300.57987 * 15 13 9 26 26 H 1.00896 * 111.00417 * 171.84110 * 16 15 13 27 27 H 1.00899 * 110.99735 * 295.79284 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.0925 -2.5614 0.3642 11 6 -0.2111 -4.0421 0.8040 12 6 0.7567 -4.7400 -0.1879 13 6 1.8830 -3.6994 -0.3617 14 1 2.7170 -3.9423 0.2966 15 6 2.3564 -3.6833 -1.8166 16 7 3.4023 -2.6647 -1.9800 17 1 -0.4849 0.8401 -0.0004 18 1 -0.7315 -2.3694 -0.4978 19 1 -0.3584 -1.8986 1.1877 20 1 -1.2303 -4.4069 0.6772 21 1 0.1233 -4.1726 1.8332 22 1 0.2607 -4.9338 -1.1388 23 1 1.1481 -5.6645 0.2369 24 1 2.7583 -4.6619 -2.0789 25 1 1.5158 -3.4489 -2.4697 26 1 3.8244 -2.7232 -2.8946 27 1 3.0363 -1.7400 -1.8092 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082631493.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = -2.555237 kcal Electronic energy + Delta-G solvation = -10382.552704 eV Core-core repulsion = 8560.741832 eV Total energy + Delta-G solvation = -1821.810872 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.42697 -34.82077 -34.46687 -31.07380 -29.53208 -26.61497 -24.33762 -21.81009 -20.90286 -18.75825 -17.41275 -16.41975 -15.87352 -15.52994 -15.18096 -14.11041 -13.70618 -13.60675 -13.30473 -12.92803 -12.69624 -12.61806 -12.01842 -11.73117 -11.47814 -11.38338 -11.35940 -10.60828 -9.46495 -8.70832 -7.83767 -5.19143 1.47683 1.49693 1.56246 2.52245 3.31790 3.70751 3.95075 4.08880 4.30453 4.40023 4.60864 4.64234 4.84628 4.94657 5.03478 5.13775 5.26110 5.55504 5.60590 5.68606 5.78466 6.28822 6.46289 6.82063 7.16037 7.84890 8.54478 9.28590 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.050409 B = 0.019873 C = 0.015224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.324120 B = 1408.590602 C = 1838.812171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.615 5.615 10 C 0.175 3.825 11 C -0.135 4.135 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.030 0.970 15 C 0.064 3.936 16 N -0.859 5.859 17 H 0.245 0.755 18 H -0.005 1.005 19 H 0.025 0.975 20 H 0.083 0.917 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.002 0.998 26 H 0.332 0.668 27 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -7.291 -1.935 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.050 3.950 11 C -0.174 4.174 12 C -0.152 4.152 13 C 0.042 3.958 14 H 0.048 0.952 15 C -0.069 4.069 16 N -0.393 5.393 17 H 0.054 0.946 18 H 0.013 0.987 19 H 0.043 0.957 20 H 0.101 0.899 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.020 0.980 26 H 0.144 0.856 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.435 -7.441 -1.327 7.941 hybrid contribution -0.441 1.626 -0.787 1.860 sum 1.994 -5.815 -2.115 6.501 Atomic orbital electron populations 1.70154 1.06440 1.25244 1.57950 1.25759 0.96413 1.00985 1.02703 0.85264 0.77187 0.79227 0.78373 1.19853 1.22483 1.20708 1.19320 0.90925 0.83136 1.41967 0.89700 1.44800 1.08141 1.03148 1.77940 1.21174 0.85279 0.92708 0.95859 1.22872 0.99793 0.95813 0.98892 1.22531 0.95653 0.97391 0.99621 1.21285 0.94933 0.86039 0.93578 0.95213 1.22179 0.92103 0.95415 0.97175 1.59035 1.35414 1.10175 1.34689 0.94564 0.98709 0.95668 0.89876 0.91799 0.91037 0.88839 0.90098 0.98017 0.85579 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.41 10.70 21.65 0.23 -57.18 15 2 C -0.07 -3.69 5.46 84.86 0.46 -3.23 15 3 Si 0.97 45.83 29.55 68.60 2.03 47.86 15 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 15 6 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 7 C -0.22 -12.39 7.67 84.03 0.64 -11.74 15 8 H 0.09 4.61 6.94 -2.91 -0.02 4.59 15 9 N -0.62 -31.63 3.13 -668.25 -2.09 -33.72 15 10 C 0.18 8.78 5.37 86.86 0.47 9.25 15 11 C -0.14 -5.00 7.09 31.99 0.23 -4.77 15 12 C -0.11 -3.79 6.48 31.78 0.21 -3.58 15 13 C 0.15 6.17 3.48 45.34 0.16 6.33 15 14 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 15 C 0.06 2.44 6.34 86.30 0.55 2.98 15 16 N -0.86 -33.68 9.12 -186.70 -1.70 -35.38 15 17 H 0.25 14.53 8.31 -92.71 -0.77 13.76 15 18 H -0.01 -0.28 7.99 -2.38 -0.02 -0.30 15 19 H 0.02 1.42 7.15 -2.39 -0.02 1.40 15 20 H 0.08 2.64 8.14 -2.39 -0.02 2.62 15 21 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.07 2.23 7.85 -2.39 -0.02 2.22 15 23 H 0.09 2.50 8.14 -2.38 -0.02 2.48 15 24 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 15 26 H 0.33 10.81 9.08 -89.70 -0.81 10.00 15 27 H 0.35 15.87 5.78 -89.69 -0.52 15.35 15 Total: -1.00 -63.38 217.65 1.00 -62.38 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.17 Total: 20.82 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 2.71 Total: -4.77 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -3.56 Total: -126.29 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -63.38 1.00 -62.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082631493.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.823 kcal (2) G-P(sol) polarization free energy of solvation -63.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds