Wall clock time and date at job start Mon Mar 30 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08992 * 109.46533 * 2 1 4 4 C 1.50696 * 109.47116 * 239.99663 * 2 1 3 5 5 H 1.08003 * 120.00373 * 245.19067 * 4 2 1 6 6 C 1.37875 * 119.99985 * 65.18414 * 4 2 1 7 7 N 1.31515 * 119.99923 * 8.56497 * 6 4 2 8 8 Si 1.86803 * 119.99930 * 188.55869 * 6 4 2 9 9 H 1.48503 * 109.46927 * 60.00757 * 8 6 4 10 10 H 1.48503 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48489 * 109.47326 * 300.00398 * 8 6 4 12 12 N 1.46904 * 109.46773 * 119.99699 * 2 1 3 13 13 C 1.47477 * 110.99933 * 281.69660 * 12 2 1 14 14 C 1.53515 * 87.92893 * 221.29776 * 13 12 2 15 15 N 1.46903 * 114.17063 * 139.67081 * 14 13 12 16 16 C 1.47471 * 110.99709 * 185.72303 * 12 2 1 17 17 H 1.08999 * 109.47058 * 174.83475 * 1 2 3 18 18 H 1.08997 * 109.47124 * 294.83550 * 1 2 3 19 19 H 1.08994 * 109.47002 * 54.83712 * 1 2 3 20 20 H 0.96995 * 119.99844 * 5.26777 * 7 6 4 21 21 H 1.08998 * 113.47769 * 336.06034 * 13 12 2 22 22 H 1.08997 * 113.47833 * 106.53356 * 13 12 2 23 23 H 1.08998 * 114.17068 * 272.37386 * 14 13 12 24 24 H 1.00903 * 110.99959 * 86.15629 * 15 14 13 25 25 H 1.00893 * 111.00255 * 210.11538 * 15 14 13 26 26 H 1.09005 * 113.47941 * 253.47286 * 16 12 2 27 27 H 1.08998 * 113.48047 * 23.87609 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5825 -1.6349 -1.1335 6 6 1.7897 -0.1804 -2.4798 7 7 1.2712 1.0227 -2.5944 8 14 2.1976 -1.1713 -4.0100 9 1 1.4222 -2.4378 -4.0009 10 1 1.8452 -0.3834 -5.2185 11 1 3.6499 -1.4801 -4.0272 12 7 2.0197 -0.6925 1.1995 13 6 1.9327 0.1795 2.3857 14 6 3.3083 -0.3538 2.8098 15 7 4.2044 0.6686 3.3663 16 6 3.4874 -0.5944 1.3042 17 1 -0.3633 -1.0235 -0.0925 18 1 -0.3633 0.4316 0.9326 19 1 -0.3633 0.5918 -0.8401 20 1 1.1304 1.5674 -1.8042 21 1 1.9347 1.2425 2.1443 22 1 1.1302 -0.0966 3.0697 23 1 3.2691 -1.2655 3.4059 24 1 4.0465 0.7878 4.3558 25 1 5.1699 0.4440 3.1787 26 1 4.0027 -1.5264 1.0717 27 1 3.9045 0.2614 0.7734 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083636086.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:12 Heat of formation + Delta-G solvation = 30.012032 kcal Electronic energy + Delta-G solvation = -10123.099324 eV Core-core repulsion = 8302.700674 eV Total energy + Delta-G solvation = -1820.398649 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.37370 -34.32937 -32.22112 -29.54939 -25.89063 -24.71358 -24.08658 -20.22522 -19.04851 -16.90701 -15.58423 -15.32498 -15.03325 -13.71839 -13.43635 -12.75919 -12.44944 -11.86755 -11.62876 -11.15929 -10.91751 -10.66532 -10.23666 -10.06939 -9.93435 -9.91146 -8.58341 -8.46310 -8.38729 -7.82688 -6.33354 -4.03571 3.45442 3.48069 3.66583 4.52943 4.66290 4.88482 5.10954 5.38067 5.50075 5.97415 6.17096 6.22987 6.39681 6.45444 6.53860 6.67191 6.82381 7.04131 7.21660 7.36811 7.55024 7.64182 8.01927 8.29219 8.57668 8.87694 9.66472 11.03369 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.068430 B = 0.013677 C = 0.012518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.079946 B = 2046.669333 C = 2236.298394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.169 3.831 3 H 0.000 1.000 4 C -0.588 4.588 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 1.067 2.933 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.289 1.289 12 N -0.463 5.463 13 C 0.007 3.993 14 C 0.041 3.959 15 N -0.838 5.838 16 C 0.030 3.970 17 H 0.045 0.955 18 H 0.016 0.984 19 H 0.056 0.944 20 H 0.269 0.731 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.336 0.664 25 H 0.340 0.660 26 H 0.069 0.931 27 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -1.920 8.214 9.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 H 0.018 0.982 4 C -0.626 4.626 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.547 5.547 8 Si 0.895 3.105 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.216 1.216 12 N -0.186 5.186 13 C -0.123 4.123 14 C -0.071 4.071 15 N -0.368 5.368 16 C -0.099 4.099 17 H 0.064 0.936 18 H 0.035 0.965 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.152 0.848 26 H 0.087 0.913 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.835 -2.054 5.987 6.936 hybrid contribution 0.776 0.024 2.199 2.332 sum 3.611 -2.030 8.187 9.175 Atomic orbital electron populations 1.21755 0.98116 1.00642 0.98352 1.19899 0.92417 0.92599 0.88947 0.98232 1.21844 1.39157 1.10236 0.91386 0.92807 1.25773 0.94252 0.97042 1.01227 1.70785 1.41471 1.08851 1.33631 0.83587 0.76147 0.75176 0.75590 1.21395 1.20834 1.21557 1.68843 1.07137 1.39159 1.03509 1.23795 0.95444 0.97492 0.95572 1.23143 0.94734 0.92931 0.96289 1.58838 1.08839 1.49489 1.19631 1.23495 0.93084 1.01217 0.92150 0.93576 0.96530 0.92499 0.91976 0.91511 0.91491 0.91612 0.85282 0.84764 0.91271 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.08 37.16 0.34 -2.91 15 2 C 0.17 4.43 1.29 -68.86 -0.09 4.35 15 3 H 0.00 0.00 6.83 -51.93 -0.35 -0.35 15 4 C -0.59 -16.86 8.06 -34.44 -0.28 -17.14 15 5 H 0.05 1.57 7.76 -52.48 -0.41 1.16 15 6 C 0.02 0.61 5.25 -17.82 -0.09 0.52 15 7 N -0.91 -27.63 12.91 55.43 0.72 -26.91 15 8 Si 1.07 25.53 29.91 -169.99 -5.08 20.45 15 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 12 N -0.46 -10.57 6.12 -238.03 -1.46 -12.03 15 13 C 0.01 0.13 6.96 -7.55 -0.05 0.08 15 14 C 0.04 0.67 5.31 -67.50 -0.36 0.31 15 15 N -0.84 -11.63 9.61 -4.43 -0.04 -11.67 15 16 C 0.03 0.61 6.81 -7.56 -0.05 0.56 15 17 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 18 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 15 19 H 0.06 1.49 6.53 -51.93 -0.34 1.15 15 20 H 0.27 8.17 6.21 -40.82 -0.25 7.92 15 21 H 0.07 1.37 7.63 -51.93 -0.40 0.97 15 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 24 H 0.34 3.81 9.08 -39.29 -0.36 3.45 15 25 H 0.34 4.13 9.07 -39.30 -0.36 3.77 15 26 H 0.07 1.37 8.14 -51.93 -0.42 0.94 15 27 H 0.07 1.60 7.84 -51.93 -0.41 1.19 15 LS Contribution 223.88 15.07 3.37 3.37 Total: -1.00 -30.74 223.88 -6.84 -37.58 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.76 Total: 3.43 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.58 Total: -14.23 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.78 Total: -50.61 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -30.74 -6.84 -37.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083636086.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.594 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds