Wall clock time and date at job start Mon Mar 30 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47480 * 111.00171 * 265.97194 * 11 10 9 13 13 C 1.53513 * 87.93170 * 221.29782 * 12 11 10 14 14 N 1.46898 * 114.17113 * 272.37532 * 13 12 11 15 15 C 1.47482 * 110.99764 * 169.99993 * 11 10 9 16 16 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 18 18 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 19 19 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 20 20 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 21 21 H 1.08999 * 113.47664 * 336.06792 * 12 11 10 22 22 H 1.08994 * 113.47488 * 106.52987 * 12 11 10 23 23 H 1.09008 * 114.34088 * 139.68190 * 13 12 11 24 24 H 1.00901 * 110.99948 * 273.84118 * 14 13 12 25 25 H 1.00894 * 110.99832 * 37.80009 * 14 13 12 26 26 H 1.08994 * 113.48196 * 253.46980 * 15 11 10 27 27 H 1.09003 * 113.47819 * 23.94188 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 1.3309 -5.4401 1.3756 13 6 1.6490 -6.8435 0.8409 14 7 0.4790 -7.5742 0.3356 15 6 2.4208 -6.0699 -0.2373 16 1 -0.4850 0.8400 -0.0004 17 1 0.6241 -2.5575 -0.8880 18 1 0.6247 -2.5564 0.8919 19 1 2.8714 -3.6047 -0.8890 20 1 2.8726 -3.6039 0.8910 21 1 2.0749 -5.0640 2.0778 22 1 0.3110 -5.3374 1.7459 23 1 2.2796 -7.4424 1.4980 24 1 0.0087 -8.0641 1.0819 25 1 -0.1547 -6.9537 -0.1454 26 1 2.3245 -6.5011 -1.2337 27 1 3.4557 -5.8620 0.0345 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083636396.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:22 Heat of formation + Delta-G solvation = 1.304677 kcal Electronic energy + Delta-G solvation = -9730.093553 eV Core-core repulsion = 7908.450059 eV Total energy + Delta-G solvation = -1821.643494 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.09915 -35.78187 -34.07216 -31.75409 -28.06601 -26.85108 -25.24363 -22.37414 -20.34105 -18.60116 -17.44942 -16.61424 -16.45402 -16.04567 -15.28211 -14.60709 -14.15205 -13.82358 -13.67649 -13.15706 -12.80580 -12.59224 -12.23860 -12.01219 -11.59110 -11.41884 -11.13605 -10.58875 -9.76977 -9.62644 -8.23166 -6.36263 1.38099 1.42041 1.50092 2.38173 3.09714 3.13975 3.42105 3.77530 4.00838 4.21607 4.41207 4.49737 4.61345 4.68331 4.83058 4.97901 5.07836 5.33124 5.41835 5.71322 5.75743 6.09870 6.18362 6.26482 6.61679 6.80771 7.33600 8.89024 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.114568 B = 0.009267 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 244.337747 B = 3020.805087 C = 3141.428808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.042 3.958 10 C 0.044 3.956 11 N -0.497 5.497 12 C -0.041 4.041 13 C 0.086 3.914 14 N -0.824 5.824 15 C -0.003 4.003 16 H 0.265 0.735 17 H -0.013 1.013 18 H -0.015 1.015 19 H 0.059 0.941 20 H 0.038 0.962 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.354 0.646 25 H 0.347 0.653 26 H 0.084 0.916 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -10.899 2.850 12.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.080 0.920 9 C 0.004 3.996 10 C -0.084 4.084 11 N -0.219 5.219 12 C -0.173 4.173 13 C -0.027 4.027 14 N -0.354 5.354 15 C -0.133 4.133 16 H 0.073 0.927 17 H 0.006 0.994 18 H 0.003 0.997 19 H 0.077 0.923 20 H 0.056 0.944 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.137 0.863 24 H 0.169 0.831 25 H 0.160 0.840 26 H 0.102 0.898 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.125 -11.071 1.953 11.975 hybrid contribution 0.193 1.804 1.047 2.095 sum 4.318 -9.266 3.000 10.654 Atomic orbital electron populations 1.70114 1.08005 1.27976 1.51241 1.26032 0.95774 1.03566 0.94408 0.85426 0.78214 0.77643 0.79301 1.19035 1.20703 1.18952 1.21627 0.93568 0.92282 1.51303 0.92009 1.18779 0.94105 0.92225 0.94478 1.22529 0.95752 0.90540 0.99591 1.68868 1.34058 1.01415 1.17588 1.24771 1.02011 0.98378 0.92101 1.22603 0.94037 0.90973 0.95116 1.58621 1.12065 1.32687 1.32013 1.24028 0.96354 0.91556 1.01317 0.92666 0.99419 0.99706 0.92286 0.94406 0.91092 0.91375 0.86271 0.83142 0.83978 0.89774 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.52 13.29 21.45 0.28 -58.23 15 2 C 0.00 0.01 5.46 84.66 0.46 0.47 15 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 15 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.55 -32.32 9.11 25.60 0.23 -32.09 15 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 15 9 C 0.04 2.34 5.30 29.85 0.16 2.50 15 10 C 0.04 1.94 4.76 86.30 0.41 2.35 15 11 N -0.50 -18.54 6.13 -927.88 -5.69 -24.23 15 12 C -0.04 -1.27 7.39 83.58 0.62 -0.65 15 13 C 0.09 2.08 5.42 45.37 0.25 2.32 15 14 N -0.82 -18.79 9.68 -167.93 -1.63 -20.42 15 15 C 0.00 -0.09 7.49 83.58 0.63 0.53 15 16 H 0.26 15.51 8.31 -92.71 -0.77 14.74 15 17 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 15 18 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 15 19 H 0.06 2.55 8.08 -2.39 -0.02 2.53 15 20 H 0.04 1.59 7.30 -2.39 -0.02 1.57 15 21 H 0.07 2.15 7.42 -2.39 -0.02 2.13 15 22 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.12 2.24 8.14 -2.38 -0.02 2.22 15 24 H 0.35 6.26 9.08 -89.69 -0.81 5.44 15 25 H 0.35 8.99 8.71 -89.70 -0.78 8.21 15 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 27 H 0.08 2.09 7.91 -2.39 -0.02 2.07 15 Total: -1.00 -66.71 230.13 -2.69 -69.39 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.44 Total: 11.17 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 2.75 Total: -24.57 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -7.03 Total: -102.88 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.71 -2.69 -69.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083636396.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.698 kcal (2) G-P(sol) polarization free energy of solvation -66.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds