Wall clock time and date at job start Mon Mar 30 2020 01:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.49141 * 2 1 4 4 C 1.53239 * 109.49116 * 239.95192 * 2 1 3 5 5 N 1.47080 * 108.52184 * 186.20745 * 4 2 1 6 6 C 1.36938 * 120.88452 * 231.16100 * 5 4 2 7 7 H 1.07996 * 119.99805 * 26.58352 * 6 5 4 8 8 C 1.38812 * 119.99946 * 206.58011 * 6 5 4 9 9 N 1.31621 * 119.99901 * 17.03173 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 197.02607 * 8 6 5 11 11 H 1.48503 * 109.46960 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47303 * 120.00001 * 10 8 6 13 13 H 1.48497 * 109.47102 * 240.00529 * 10 8 6 14 14 C 1.47085 * 118.23367 * 51.18484 * 5 4 2 15 15 C 1.53245 * 108.52028 * 308.81279 * 14 5 4 16 16 N 1.46886 * 109.49525 * 120.08401 * 2 1 3 17 17 H 1.08995 * 109.46760 * 180.02562 * 1 2 3 18 18 H 1.08993 * 109.46905 * 300.05497 * 1 2 3 19 19 H 1.09002 * 109.47044 * 60.05199 * 1 2 3 20 20 H 1.09000 * 109.62647 * 305.91613 * 4 2 1 21 21 H 1.08998 * 109.63350 * 66.49539 * 4 2 1 22 22 H 0.97000 * 119.99798 * 179.97438 * 9 8 6 23 23 H 1.08999 * 109.62400 * 189.10643 * 14 5 4 24 24 H 1.08998 * 109.63436 * 68.52402 * 14 5 4 25 25 H 1.09001 * 109.49122 * 293.87357 * 15 14 5 26 26 H 1.08993 * 109.48970 * 173.79537 * 15 14 5 27 27 H 1.00900 * 111.00010 * 307.20980 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7233 -1.2504 5 7 3.5043 -0.8428 -1.1557 6 6 4.3105 -0.4425 -2.1877 7 1 3.9742 0.3248 -2.8693 8 6 5.5599 -1.0228 -2.3577 9 7 5.8425 -2.1627 -1.7633 10 14 6.8402 -0.1862 -3.4302 11 1 6.2785 1.0737 -3.9800 12 1 8.0429 0.1225 -2.6158 13 1 7.2171 -1.0895 -4.5470 14 6 4.0782 -1.4041 0.0767 15 6 3.4867 -0.6539 1.2748 16 7 2.0203 -0.6941 1.1981 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5147 0.8894 19 1 -0.3633 0.5130 -0.8905 20 1 1.5958 -1.7165 -1.3068 21 1 1.7776 -0.1497 -2.1389 22 1 6.7154 -2.5684 -1.8824 23 1 5.1611 -1.2805 0.0655 24 1 3.8285 -2.4627 0.1479 25 1 3.8236 0.3826 1.2573 26 1 3.8158 -1.1281 2.1994 27 1 1.6040 -0.3111 2.0336 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083814597.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:08 Heat of formation + Delta-G solvation = -1.455801 kcal Electronic energy + Delta-G solvation = -10276.443422 eV Core-core repulsion = 8454.680225 eV Total energy + Delta-G solvation = -1821.763197 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.43538 -35.73794 -33.01961 -32.74893 -28.30309 -27.43559 -24.42680 -22.90377 -20.66482 -18.74746 -17.15742 -16.58482 -15.86655 -15.47272 -15.13699 -14.89030 -14.35891 -13.31639 -13.00581 -12.98329 -12.80571 -12.56049 -12.26173 -12.04550 -11.84028 -11.62484 -11.38493 -10.62429 -9.41462 -8.70428 -7.90203 -5.36012 1.44854 1.45741 1.57404 2.48731 3.22931 3.33348 3.65703 4.14886 4.34091 4.45034 4.56886 4.59457 4.80831 4.91806 4.94789 5.05771 5.15373 5.33135 5.44728 5.57831 5.64953 6.15466 6.34600 6.68059 7.09892 7.80455 8.35438 9.16649 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.075444 B = 0.014744 C = 0.013375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.045468 B = 1898.595802 C = 2092.977062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.072 3.928 3 H 0.024 0.976 4 C 0.148 3.852 5 N -0.618 5.618 6 C -0.268 4.268 7 H 0.067 0.933 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.973 3.027 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.290 1.290 14 C 0.181 3.819 15 C 0.049 3.951 16 N -0.684 5.684 17 H 0.059 0.941 18 H 0.071 0.929 19 H 0.069 0.931 20 H 0.012 0.988 21 H 0.056 0.944 22 H 0.251 0.749 23 H 0.057 0.943 24 H -0.005 1.005 25 H 0.018 0.982 26 H 0.085 0.915 27 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.901 5.093 4.619 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.039 4.039 3 H 0.042 0.958 4 C 0.022 3.978 5 N -0.342 5.342 6 C -0.398 4.398 7 H 0.085 0.915 8 C -0.249 4.249 9 N -0.583 5.583 10 Si 0.800 3.200 11 H -0.191 1.191 12 H -0.214 1.214 13 H -0.217 1.217 14 C 0.055 3.945 15 C -0.081 4.081 16 N -0.317 5.317 17 H 0.078 0.922 18 H 0.090 0.910 19 H 0.088 0.912 20 H 0.030 0.970 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.013 0.987 25 H 0.036 0.964 26 H 0.104 0.896 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.783 4.401 4.292 9.154 hybrid contribution 1.108 0.869 -0.367 1.455 sum -5.675 5.270 3.924 8.682 Atomic orbital electron populations 1.21698 0.91872 1.02553 1.02737 1.21930 0.96366 0.94329 0.91249 0.95772 1.21197 0.83803 0.96844 0.95921 1.44460 1.01246 1.73891 1.14560 1.19596 0.98278 1.14537 1.07382 0.91508 1.25869 1.01705 0.96141 1.01206 1.70213 1.21936 1.17448 1.48674 0.85128 0.78822 0.78145 0.77865 1.19085 1.21386 1.21669 1.20668 0.96986 0.92973 0.83863 1.22421 0.88278 0.98109 0.99320 1.60270 1.06410 1.59920 1.05114 0.92221 0.90962 0.91176 0.97036 0.92553 0.93975 0.92494 0.98659 0.96423 0.89641 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.43 71.98 0.68 -2.73 15 2 C 0.07 2.58 3.18 45.00 0.14 2.72 15 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 4 C 0.15 6.63 5.98 86.35 0.52 7.15 15 5 N -0.62 -33.31 3.04 -698.11 -2.12 -35.43 15 6 C -0.27 -15.46 9.63 84.03 0.81 -14.65 15 7 H 0.07 3.74 7.88 -2.91 -0.02 3.72 15 8 C -0.05 -3.12 4.93 84.86 0.42 -2.70 15 9 N -0.94 -57.23 11.15 21.65 0.24 -56.99 15 10 Si 0.97 45.84 29.59 68.60 2.03 47.87 15 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 15 14 C 0.18 9.38 5.42 86.35 0.47 9.85 15 15 C 0.05 1.98 6.70 86.39 0.58 2.55 15 16 N -0.68 -24.10 6.49 -490.74 -3.18 -27.28 15 17 H 0.06 1.59 8.14 -2.39 -0.02 1.57 15 18 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 19 H 0.07 1.65 8.14 -2.39 -0.02 1.63 15 20 H 0.01 0.55 8.14 -2.39 -0.02 0.53 15 21 H 0.06 2.42 7.95 -2.39 -0.02 2.40 15 22 H 0.25 14.70 8.31 -92.71 -0.77 13.93 15 23 H 0.06 3.26 6.12 -2.39 -0.01 3.24 15 24 H 0.00 -0.27 8.14 -2.39 -0.02 -0.28 15 25 H 0.02 0.71 8.14 -2.39 -0.02 0.69 15 26 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 27 H 0.35 9.66 8.77 -89.69 -0.79 8.87 15 Total: -1.00 -65.66 221.01 0.93 -64.73 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 0.35 Total: 4.91 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 3.61 Total: 2.19 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -5.06 Total: -119.70 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -65.66 0.93 -64.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814597.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.273 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds