Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49553 * 2 1 4 4 C 1.53242 * 109.51164 * 120.06664 * 2 1 3 5 5 N 1.47078 * 108.52021 * 173.80041 * 4 2 1 6 6 C 1.36944 * 120.88241 * 128.83588 * 5 4 2 7 7 H 1.07997 * 120.00052 * 206.56912 * 6 5 4 8 8 C 1.38812 * 119.99688 * 26.56621 * 6 5 4 9 9 N 1.31621 * 119.99901 * 17.02062 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 197.01496 * 8 6 5 11 11 H 1.48500 * 109.46861 * 59.99989 * 10 8 6 12 12 H 1.48502 * 109.47293 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47146 * 300.00451 * 10 8 6 14 14 C 1.47083 * 118.23779 * 308.81638 * 5 4 2 15 15 C 1.53237 * 108.52124 * 51.18521 * 14 5 4 16 16 N 1.46898 * 109.49145 * 239.94353 * 2 1 3 17 17 H 1.08995 * 109.47661 * 180.02562 * 1 2 3 18 18 H 1.09008 * 109.47008 * 300.05472 * 1 2 3 19 19 H 1.08998 * 109.47386 * 60.05129 * 1 2 3 20 20 H 1.09004 * 109.63185 * 293.50938 * 4 2 1 21 21 H 1.09003 * 109.62885 * 54.09419 * 4 2 1 22 22 H 0.97000 * 119.99798 * 179.97438 * 9 8 6 23 23 H 1.08994 * 109.62771 * 291.47255 * 14 5 4 24 24 H 1.09005 * 109.62612 * 170.89328 * 14 5 4 25 25 H 1.08996 * 109.49511 * 66.12926 * 15 14 5 26 26 H 1.08997 * 109.49268 * 186.21369 * 15 14 5 27 27 H 1.00900 * 110.99927 * 301.06271 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7237 1.2501 5 7 3.5047 -0.8426 1.1549 6 6 4.3111 -0.4423 2.1869 7 1 5.3244 -0.1257 1.9889 8 6 3.8259 -0.4436 3.4875 9 7 2.7407 -1.1267 3.7843 10 14 4.7132 0.5239 4.8163 11 1 4.7425 1.9616 4.4456 12 1 3.9996 0.3597 6.1082 13 1 6.1033 0.0192 4.9514 14 6 4.0786 -1.4033 -0.0778 15 6 3.4866 -0.6529 -1.2755 16 7 2.0202 -0.6936 -1.1986 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5147 0.8896 19 1 -0.3634 0.5130 -0.8904 20 1 1.7781 -0.1504 2.1389 21 1 1.5966 -1.7170 1.3062 22 1 2.4018 -1.1278 4.6932 23 1 3.8292 -2.4619 -0.1493 24 1 5.1616 -1.2793 -0.0669 25 1 3.8231 0.3837 -1.2578 26 1 3.8156 -1.1267 -2.2003 27 1 1.6826 -1.6439 -1.2298 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083814598.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 18.156639 kcal Electronic energy + Delta-G solvation = -10335.338860 eV Core-core repulsion = 8514.426123 eV Total energy + Delta-G solvation = -1820.912738 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.88965 -33.64723 -31.80235 -30.29488 -26.46776 -25.51533 -22.62897 -20.98355 -19.60807 -16.85269 -14.91086 -14.34821 -14.25272 -13.67914 -13.45525 -13.07624 -12.53782 -11.73381 -11.50246 -11.10848 -11.03082 -10.70355 -10.46402 -10.24397 -10.10805 -9.95793 -9.72958 -8.51295 -7.90231 -6.59062 -5.77322 -3.21775 3.37512 3.42959 3.44578 4.47521 4.95169 5.31940 5.45341 5.83348 5.91950 6.00843 6.13911 6.19888 6.28188 6.47582 6.60210 6.65301 6.75417 6.87273 7.20064 7.55558 7.73136 7.81784 8.06251 8.41619 9.18358 9.81946 10.38532 11.28733 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060825 B = 0.016530 C = 0.014238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.226126 B = 1693.445004 C = 1966.132675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.053 3.947 3 H 0.071 0.929 4 C 0.146 3.854 5 N -0.596 5.596 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.001 3.999 9 N -0.904 5.904 10 Si 0.905 3.095 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.107 3.893 15 C 0.043 3.957 16 N -0.685 5.685 17 H 0.048 0.952 18 H 0.056 0.944 19 H 0.050 0.950 20 H 0.088 0.912 21 H 0.017 0.983 22 H 0.254 0.746 23 H 0.015 0.985 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 1.223 -6.078 6.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 H 0.089 0.911 4 C 0.019 3.981 5 N -0.320 5.320 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.198 4.198 9 N -0.549 5.549 10 Si 0.734 3.266 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.209 1.209 14 C -0.021 4.021 15 C -0.089 4.089 16 N -0.314 5.314 17 H 0.067 0.933 18 H 0.075 0.925 19 H 0.069 0.931 20 H 0.107 0.893 21 H 0.035 0.965 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.850 1.761 -6.308 6.806 hybrid contribution 0.710 -0.261 1.524 1.701 sum -1.140 1.500 -4.785 5.142 Atomic orbital electron populations 1.21688 0.95538 1.01237 1.00923 1.22241 0.93938 0.98733 0.90863 0.91123 1.21460 0.83331 0.97355 0.95959 1.44101 1.01933 1.72088 1.13855 1.19163 0.96554 1.37070 0.85481 0.91656 1.25036 0.98405 0.99240 0.97091 1.70034 1.24674 1.41239 1.18937 0.86335 0.79021 0.80225 0.80997 1.21000 1.21559 1.20870 1.21654 0.97510 0.94663 0.88225 1.22404 0.88186 1.00921 0.97348 1.60862 1.09487 1.20603 1.40490 0.93292 0.92498 0.93052 0.89343 0.96514 0.93582 0.96715 0.92604 0.91584 0.92028 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.49 37.16 0.35 -1.93 15 2 C 0.05 1.08 3.17 -67.59 -0.21 0.86 15 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 4 C 0.15 3.58 4.68 -3.60 -0.02 3.57 15 5 N -0.60 -15.56 3.04 -172.01 -0.52 -16.08 15 6 C -0.25 -7.18 9.63 -15.06 -0.15 -7.32 15 7 H 0.07 1.81 7.88 -52.49 -0.41 1.40 15 8 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 15 9 N -0.90 -26.77 11.15 55.49 0.62 -26.15 15 10 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 15 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 14 C 0.11 2.34 6.67 -3.60 -0.02 2.31 15 15 C 0.04 0.79 6.70 -3.70 -0.02 0.77 15 16 N -0.69 -12.73 6.48 -106.46 -0.69 -13.42 15 17 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 18 H 0.06 0.93 8.14 -51.92 -0.42 0.51 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.09 2.42 6.12 -51.93 -0.32 2.10 15 21 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.25 7.26 8.31 -40.82 -0.34 6.92 15 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 24 H 0.06 1.18 7.95 -51.93 -0.41 0.77 15 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.33 5.85 8.78 -39.29 -0.35 5.50 15 LS Contribution 221.03 15.07 3.33 3.33 Total: -1.00 -29.79 221.03 -6.46 -36.25 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.01 Total: 0.86 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.16 Total: -1.81 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.59 Total: -55.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.79 -6.46 -36.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814598.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.406 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds