Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49553 * 2 1 4 4 C 1.53242 * 109.51164 * 120.06664 * 2 1 3 5 5 N 1.47078 * 108.52021 * 173.80041 * 4 2 1 6 6 C 1.36944 * 120.88241 * 128.83588 * 5 4 2 7 7 H 1.07997 * 120.00052 * 206.56912 * 6 5 4 8 8 C 1.38812 * 119.99688 * 26.56621 * 6 5 4 9 9 N 1.31621 * 119.99901 * 17.02062 * 8 6 5 10 10 Si 1.86794 * 120.00004 * 197.01496 * 8 6 5 11 11 H 1.48500 * 109.46861 * 59.99989 * 10 8 6 12 12 H 1.48502 * 109.47293 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47146 * 300.00451 * 10 8 6 14 14 C 1.47083 * 118.23779 * 308.81638 * 5 4 2 15 15 C 1.53237 * 108.52124 * 51.18521 * 14 5 4 16 16 N 1.46898 * 109.49145 * 239.94353 * 2 1 3 17 17 H 1.08995 * 109.47661 * 180.02562 * 1 2 3 18 18 H 1.09008 * 109.47008 * 300.05472 * 1 2 3 19 19 H 1.08998 * 109.47386 * 60.05129 * 1 2 3 20 20 H 1.09004 * 109.63185 * 293.50938 * 4 2 1 21 21 H 1.09003 * 109.62885 * 54.09419 * 4 2 1 22 22 H 0.97000 * 119.99798 * 179.97438 * 9 8 6 23 23 H 1.08994 * 109.62771 * 291.47255 * 14 5 4 24 24 H 1.09005 * 109.62612 * 170.89328 * 14 5 4 25 25 H 1.08996 * 109.49511 * 66.12926 * 15 14 5 26 26 H 1.08997 * 109.49268 * 186.21369 * 15 14 5 27 27 H 1.00900 * 110.99927 * 301.06271 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7237 1.2501 5 7 3.5047 -0.8426 1.1549 6 6 4.3111 -0.4423 2.1869 7 1 5.3244 -0.1257 1.9889 8 6 3.8259 -0.4436 3.4875 9 7 2.7407 -1.1267 3.7843 10 14 4.7132 0.5239 4.8163 11 1 4.7425 1.9616 4.4456 12 1 3.9996 0.3597 6.1082 13 1 6.1033 0.0192 4.9514 14 6 4.0786 -1.4033 -0.0778 15 6 3.4866 -0.6529 -1.2755 16 7 2.0202 -0.6936 -1.1986 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5147 0.8896 19 1 -0.3634 0.5130 -0.8904 20 1 1.7781 -0.1504 2.1389 21 1 1.5966 -1.7170 1.3062 22 1 2.4018 -1.1278 4.6932 23 1 3.8292 -2.4619 -0.1493 24 1 5.1616 -1.2793 -0.0669 25 1 3.8231 0.3837 -1.2578 26 1 3.8156 -1.1267 -2.2003 27 1 1.6826 -1.6439 -1.2298 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083814598.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = -3.138806 kcal Electronic energy + Delta-G solvation = -10336.262300 eV Core-core repulsion = 8514.426123 eV Total energy + Delta-G solvation = -1821.836178 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.61818 -35.57683 -33.52016 -32.21568 -28.08414 -27.50438 -24.46998 -22.67062 -21.35712 -18.89833 -16.92887 -15.98584 -15.91007 -15.46504 -15.34101 -14.85420 -14.23957 -13.47317 -13.07227 -12.94571 -12.79967 -12.54875 -12.23179 -12.08661 -11.86355 -11.71077 -11.57684 -10.63489 -9.64131 -8.60080 -7.88687 -5.39118 1.42931 1.45763 1.52907 2.46129 3.20404 3.39249 3.62247 4.24185 4.31667 4.48043 4.52473 4.59631 4.72247 4.89789 5.01377 5.07726 5.22730 5.30683 5.34621 5.54327 5.60583 6.14429 6.31893 6.56201 7.06672 7.77151 8.28792 9.12714 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060825 B = 0.016530 C = 0.014238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.226126 B = 1693.445004 C = 1966.132675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.065 3.935 3 H 0.058 0.942 4 C 0.155 3.845 5 N -0.618 5.618 6 C -0.270 4.270 7 H 0.066 0.934 8 C -0.052 4.052 9 N -0.936 5.936 10 Si 0.971 3.029 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.274 1.274 14 C 0.102 3.898 15 C 0.053 3.947 16 N -0.674 5.674 17 H 0.054 0.946 18 H 0.056 0.944 19 H 0.074 0.926 20 H 0.054 0.946 21 H -0.006 1.006 22 H 0.251 0.749 23 H 0.013 0.987 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 1.709 -7.150 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.047 4.047 3 H 0.077 0.923 4 C 0.028 3.972 5 N -0.343 5.343 6 C -0.400 4.400 7 H 0.084 0.916 8 C -0.247 4.247 9 N -0.581 5.581 10 Si 0.799 3.201 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.200 1.200 14 C -0.025 4.025 15 C -0.078 4.078 16 N -0.303 5.303 17 H 0.073 0.927 18 H 0.075 0.925 19 H 0.093 0.907 20 H 0.072 0.928 21 H 0.012 0.988 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.706 2.243 -7.418 7.935 hybrid contribution 0.697 -0.464 1.816 2.000 sum -1.009 1.779 -5.602 5.964 Atomic orbital electron populations 1.21623 0.92818 1.02054 1.02063 1.22047 0.96064 0.97389 0.89149 0.92321 1.21324 0.82974 0.96016 0.96925 1.44425 1.02429 1.72686 1.14725 1.19514 0.96995 1.36997 0.86528 0.91593 1.25840 0.99407 1.00250 0.99228 1.70191 1.26224 1.42629 1.19093 0.85284 0.78048 0.78841 0.77951 1.20360 1.21700 1.19979 1.21861 0.97844 0.94826 0.87927 1.22362 0.87812 1.00399 0.97232 1.60884 1.09496 1.21054 1.38825 0.92654 0.92512 0.90744 0.92789 0.98784 0.93993 0.96909 0.92391 0.92170 0.88260 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.49 71.98 0.68 -3.36 15 2 C 0.07 2.54 3.17 45.00 0.14 2.69 15 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 15 4 C 0.15 7.68 4.68 86.35 0.40 8.08 15 5 N -0.62 -32.39 3.04 -698.11 -2.12 -34.51 15 6 C -0.27 -15.43 9.63 84.03 0.81 -14.62 15 7 H 0.07 3.66 7.88 -2.91 -0.02 3.64 15 8 C -0.05 -2.97 4.93 84.86 0.42 -2.55 15 9 N -0.94 -56.51 11.15 21.65 0.24 -56.27 15 10 Si 0.97 45.63 29.59 68.60 2.03 47.66 15 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 12 H -0.29 -13.61 7.11 99.48 0.71 -12.91 15 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 14 C 0.10 4.34 6.67 86.35 0.58 4.92 15 15 C 0.05 1.83 6.70 86.38 0.58 2.41 15 16 N -0.67 -23.35 6.48 -490.73 -3.18 -26.53 15 17 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 18 H 0.06 1.79 8.14 -2.38 -0.02 1.77 15 19 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 20 H 0.05 3.04 6.12 -2.38 -0.01 3.02 15 21 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 15 22 H 0.25 14.64 8.31 -92.71 -0.77 13.87 15 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 24 H 0.06 2.40 7.95 -2.38 -0.02 2.38 15 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 27 H 0.34 11.10 8.78 -89.69 -0.79 10.31 15 Total: -1.00 -63.40 221.03 0.93 -62.47 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.35 Total: 9.62 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 3.61 Total: -2.43 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -5.06 Total: -117.31 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -63.40 0.93 -62.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083814598.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.333 kcal (2) G-P(sol) polarization free energy of solvation -63.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds