Wall clock time and date at job start Mon Mar 30 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99749 * 2 1 4 4 H 1.48501 * 109.46740 * 269.99984 * 3 2 1 5 5 H 1.48493 * 109.47248 * 29.99606 * 3 2 1 6 6 H 1.48497 * 109.47123 * 150.00125 * 3 2 1 7 7 C 1.37875 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99952 * 175.16767 * 7 2 1 9 9 C 1.50699 * 120.00137 * 355.16230 * 7 2 1 10 10 H 1.08997 * 109.50348 * 35.20659 * 9 7 2 11 11 C 1.53034 * 109.50480 * 155.29241 * 9 7 2 12 12 N 1.46845 * 109.52225 * 179.08374 * 11 9 7 13 13 C 1.46856 * 111.22960 * 298.31127 * 12 11 9 14 14 C 1.53039 * 109.51853 * 61.72566 * 13 12 11 15 15 C 1.53117 * 109.50137 * 275.13532 * 9 7 2 16 16 H 1.08995 * 109.52783 * 62.49886 * 15 9 7 17 17 O 1.42899 * 109.52565 * 302.36793 * 15 9 7 18 18 H 0.97004 * 119.99711 * 185.18925 * 1 2 3 19 19 H 1.09006 * 109.45969 * 299.13676 * 11 9 7 20 20 H 1.08997 * 109.46212 * 59.10157 * 11 9 7 21 21 H 1.00897 * 110.97070 * 62.41244 * 12 11 9 22 22 H 1.08999 * 109.46170 * 301.70941 * 13 12 11 23 23 H 1.08998 * 109.46136 * 181.73679 * 13 12 11 24 24 H 1.08999 * 109.49928 * 180.87667 * 14 13 12 25 25 H 1.08995 * 109.53706 * 60.78350 * 14 13 12 26 26 H 0.96698 * 114.00742 * 180.02562 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0783 9 6 1.2552 -2.4968 0.1112 10 1 0.3052 -2.4161 -0.4171 11 6 2.0899 -3.6205 -0.5071 12 7 1.3697 -4.8939 -0.3798 13 6 1.1494 -5.2417 1.0298 14 6 0.2861 -4.1661 1.6931 15 6 0.9943 -2.8127 1.5865 16 1 0.3633 -2.0364 2.0193 17 8 2.2367 -2.8658 2.2905 18 1 -0.4850 -0.8367 0.0760 19 1 2.2648 -3.4052 -1.5613 20 1 3.0456 -3.6910 0.0124 21 1 0.4974 -4.8675 -0.8863 22 1 2.1092 -5.3044 1.5426 23 1 0.6414 -6.2041 1.0913 24 1 0.1358 -4.4166 2.7432 25 1 -0.6793 -4.1122 1.1901 26 1 2.1467 -3.0625 3.2330 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233552.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:08 Heat of formation + Delta-G solvation = -64.441100 kcal Electronic energy + Delta-G solvation = -10517.891059 eV Core-core repulsion = 8595.677952 eV Total energy + Delta-G solvation = -1922.213106 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.51300 -34.62899 -33.23843 -29.98786 -29.25294 -24.41642 -22.60077 -21.63763 -19.46649 -16.77974 -16.15075 -15.34301 -14.24053 -13.81921 -13.62391 -13.20325 -12.45167 -12.38057 -11.60065 -11.41549 -11.04423 -10.75061 -10.46181 -10.10890 -10.05872 -9.64428 -9.19945 -8.50540 -8.35384 -7.57541 -6.33528 -4.01932 3.44682 3.49635 3.65392 4.54399 4.99161 5.19210 5.32960 5.50289 5.66954 5.75808 6.12797 6.14660 6.33763 6.39968 6.47575 6.73786 6.87123 7.21826 7.33523 7.61645 8.00056 8.23921 8.48547 8.58022 8.90354 9.66461 11.04131 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070411 B = 0.015751 C = 0.015280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.569810 B = 1777.256433 C = 1832.031010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.005 3.995 10 H 0.040 0.960 11 C 0.071 3.929 12 N -0.695 5.695 13 C 0.067 3.933 14 C -0.194 4.194 15 C 0.111 3.889 16 H 0.041 0.959 17 O -0.547 6.547 18 H 0.265 0.735 19 H 0.062 0.938 20 H 0.067 0.933 21 H 0.329 0.671 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.772 -6.260 2.964 6.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.609 4.609 8 H 0.069 0.931 9 C -0.015 4.015 10 H 0.058 0.942 11 C -0.057 4.057 12 N -0.322 5.322 13 C -0.063 4.063 14 C -0.234 4.234 15 C 0.051 3.949 16 H 0.059 0.941 17 O -0.349 6.349 18 H 0.076 0.924 19 H 0.080 0.920 20 H 0.085 0.915 21 H 0.145 0.855 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.409 -4.871 2.213 5.532 hybrid contribution -0.932 -1.106 1.055 1.790 sum 0.477 -5.977 3.268 6.829 Atomic orbital electron populations 1.70818 1.06819 1.30498 1.47503 1.25849 0.96509 1.02732 0.93686 0.83515 0.74789 0.75013 0.76717 1.21496 1.21190 1.21407 1.21783 0.94671 0.90889 1.53516 0.93050 1.19518 0.97053 0.95871 0.89105 0.94185 1.22018 0.97579 0.86051 1.00087 1.60838 1.25764 1.34714 1.10895 1.21813 0.99279 0.95897 0.89281 1.23092 1.00077 0.99705 1.00476 1.22155 0.83935 0.91726 0.97062 0.94132 1.86668 1.31388 1.94169 1.22678 0.92379 0.91976 0.91456 0.85482 0.91035 0.92337 0.92902 0.92054 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 13.63 55.43 0.76 -27.00 15 2 C 0.01 0.43 5.45 -17.82 -0.10 0.33 15 3 Si 1.07 25.80 29.91 -169.99 -5.08 20.71 15 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.57 -16.22 7.91 -34.44 -0.27 -16.49 15 8 H 0.05 1.50 7.81 -52.49 -0.41 1.09 15 9 C 0.00 0.12 1.81 -91.69 -0.17 -0.05 15 10 H 0.04 1.07 6.67 -51.93 -0.35 0.72 15 11 C 0.07 1.59 5.68 -3.84 -0.02 1.57 15 12 N -0.69 -13.17 6.87 -113.81 -0.78 -13.96 15 13 C 0.07 1.17 6.42 -3.83 -0.02 1.14 15 14 C -0.19 -3.51 5.78 -26.65 -0.15 -3.66 15 15 C 0.11 2.49 3.25 -26.61 -0.09 2.40 15 16 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 17 O -0.55 -11.94 11.75 -35.23 -0.41 -12.36 15 18 H 0.27 7.91 6.66 -40.82 -0.27 7.64 15 19 H 0.06 1.39 8.14 -51.93 -0.42 0.96 15 20 H 0.07 1.59 7.76 -51.93 -0.40 1.18 15 21 H 0.33 5.87 8.86 -39.29 -0.35 5.52 15 22 H 0.07 1.28 7.76 -51.93 -0.40 0.88 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.35 5.84 9.09 45.56 0.41 6.25 15 LS Contribution 215.10 15.07 3.24 3.24 Total: -1.00 -30.97 215.10 -5.78 -36.75 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -2.68 Total: 7.35 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.82 Total: -14.75 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.03 Total: -40.95 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.41 Total: -12.36 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.97 -5.78 -36.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233552.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.689 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds