Wall clock time and date at job start Mon Mar 30 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99749 * 2 1 4 4 H 1.48501 * 109.46740 * 269.99984 * 3 2 1 5 5 H 1.48493 * 109.47248 * 29.99606 * 3 2 1 6 6 H 1.48497 * 109.47123 * 150.00125 * 3 2 1 7 7 C 1.37875 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99952 * 175.16767 * 7 2 1 9 9 C 1.50699 * 120.00137 * 355.16230 * 7 2 1 10 10 H 1.08997 * 109.50348 * 35.20659 * 9 7 2 11 11 C 1.53034 * 109.50480 * 155.29241 * 9 7 2 12 12 N 1.46845 * 109.52225 * 179.08374 * 11 9 7 13 13 C 1.46856 * 111.22960 * 298.31127 * 12 11 9 14 14 C 1.53039 * 109.51853 * 61.72566 * 13 12 11 15 15 C 1.53117 * 109.50137 * 275.13532 * 9 7 2 16 16 H 1.08995 * 109.52783 * 62.49886 * 15 9 7 17 17 O 1.42899 * 109.52565 * 302.36793 * 15 9 7 18 18 H 0.97004 * 119.99711 * 185.18925 * 1 2 3 19 19 H 1.09006 * 109.45969 * 299.13676 * 11 9 7 20 20 H 1.08997 * 109.46212 * 59.10157 * 11 9 7 21 21 H 1.00897 * 110.97070 * 62.41244 * 12 11 9 22 22 H 1.08999 * 109.46170 * 301.70941 * 13 12 11 23 23 H 1.08998 * 109.46136 * 181.73679 * 13 12 11 24 24 H 1.08999 * 109.49928 * 180.87667 * 14 13 12 25 25 H 1.08995 * 109.53706 * 60.78350 * 14 13 12 26 26 H 0.96698 * 114.00742 * 180.02562 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0783 9 6 1.2552 -2.4968 0.1112 10 1 0.3052 -2.4161 -0.4171 11 6 2.0899 -3.6205 -0.5071 12 7 1.3697 -4.8939 -0.3798 13 6 1.1494 -5.2417 1.0298 14 6 0.2861 -4.1661 1.6931 15 6 0.9943 -2.8127 1.5865 16 1 0.3633 -2.0364 2.0193 17 8 2.2367 -2.8658 2.2905 18 1 -0.4850 -0.8367 0.0760 19 1 2.2648 -3.4052 -1.5613 20 1 3.0456 -3.6910 0.0124 21 1 0.4974 -4.8675 -0.8863 22 1 2.1092 -5.3044 1.5426 23 1 0.6414 -6.2041 1.0913 24 1 0.1358 -4.4166 2.7432 25 1 -0.6793 -4.1122 1.1901 26 1 2.1467 -3.0625 3.2330 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233552.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:08 Heat of formation + Delta-G solvation = -89.676373 kcal Electronic energy + Delta-G solvation = -10518.985342 eV Core-core repulsion = 8595.677952 eV Total energy + Delta-G solvation = -1923.307390 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.22003 -36.31446 -35.31822 -31.65368 -31.09639 -26.47285 -24.30693 -23.37407 -21.23457 -18.89177 -17.87210 -16.97124 -15.89490 -15.72077 -15.50604 -14.90206 -14.25518 -14.03536 -13.50494 -13.22055 -12.64534 -12.61702 -12.04183 -11.94870 -11.91752 -11.56240 -10.98061 -10.54019 -10.43453 -9.24998 -8.60176 -6.29846 1.49838 1.58893 1.76897 2.54668 3.16955 3.44826 3.57930 3.97213 4.12690 4.21092 4.38031 4.58396 4.67284 4.84168 4.87555 5.03112 5.14312 5.31818 5.48866 5.85207 6.19445 6.22062 6.49881 6.64158 7.07706 7.45076 8.76971 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070411 B = 0.015751 C = 0.015280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.569810 B = 1777.256433 C = 1832.031010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.034 4.034 3 Si 1.114 2.886 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.583 4.583 8 H 0.037 0.963 9 C -0.003 4.003 10 H 0.017 0.983 11 C 0.086 3.914 12 N -0.688 5.688 13 C 0.068 3.932 14 C -0.182 4.182 15 C 0.116 3.884 16 H 0.007 0.993 17 O -0.563 6.563 18 H 0.255 0.745 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.338 0.662 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -7.214 3.520 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.231 4.231 3 Si 0.936 3.064 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.621 4.621 8 H 0.055 0.945 9 C -0.023 4.023 10 H 0.035 0.965 11 C -0.044 4.044 12 N -0.316 5.316 13 C -0.061 4.061 14 C -0.221 4.221 15 C 0.056 3.944 16 H 0.025 0.975 17 O -0.369 6.369 18 H 0.066 0.934 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.155 0.845 22 H 0.086 0.914 23 H 0.114 0.886 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.643 -5.859 2.779 6.689 hybrid contribution -0.989 -0.871 0.912 1.603 sum 0.654 -6.730 3.691 7.704 Atomic orbital electron populations 1.70925 1.07593 1.29989 1.49556 1.27167 0.96645 1.06217 0.93097 0.82963 0.74071 0.71621 0.77707 1.19777 1.20919 1.20252 1.22096 0.94207 0.92840 1.52998 0.94476 1.19523 0.95928 0.95669 0.91219 0.96452 1.21712 0.96835 0.86764 0.99074 1.60793 1.26223 1.32081 1.12487 1.21937 0.99389 0.97076 0.87715 1.22953 0.99492 0.96928 1.02769 1.21823 0.84007 0.93606 0.94919 0.97484 1.86594 1.31112 1.94395 1.24761 0.93444 0.92739 0.92795 0.84507 0.91372 0.88624 0.89756 0.91938 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.63 21.45 0.29 -57.53 15 2 C -0.03 -2.00 5.45 84.65 0.46 -1.54 15 3 Si 1.11 51.93 29.91 68.60 2.05 53.98 15 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 15 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.58 -33.63 7.91 25.60 0.20 -33.43 15 8 H 0.04 2.19 7.81 -2.91 -0.02 2.17 15 9 C 0.00 -0.16 1.81 -11.49 -0.02 -0.18 15 10 H 0.02 0.95 6.67 -2.39 -0.02 0.94 15 11 C 0.09 3.79 5.68 86.32 0.49 4.28 15 12 N -0.69 -24.65 6.87 -513.99 -3.53 -28.18 15 13 C 0.07 2.14 6.42 86.32 0.55 2.69 15 14 C -0.18 -6.10 5.78 30.65 0.18 -5.93 15 15 C 0.12 5.15 3.25 30.67 0.10 5.25 15 16 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 17 O -0.56 -23.94 11.75 -148.98 -1.75 -25.70 15 18 H 0.26 15.67 6.66 -92.71 -0.62 15.06 15 19 H 0.05 2.44 8.14 -2.38 -0.02 2.42 15 20 H 0.05 2.52 7.76 -2.39 -0.02 2.50 15 21 H 0.34 11.34 8.86 -89.70 -0.79 10.55 15 22 H 0.07 2.22 7.76 -2.39 -0.02 2.20 15 23 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.37 11.72 9.09 -74.06 -0.67 11.04 15 Total: -1.00 -66.33 215.10 -1.11 -67.43 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.14 Total: 18.83 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 1.97 Total: -28.84 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.24 Total: -85.71 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.75 Total: -25.70 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -66.33 -1.11 -67.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233552.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.242 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds