Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47159 * 270.00090 * 3 2 1 5 5 H 1.48501 * 109.47234 * 30.00321 * 3 2 1 6 6 H 1.48504 * 109.47424 * 150.00141 * 3 2 1 7 7 C 1.37881 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00013 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00119 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.53598 * 60.09052 * 9 7 2 11 11 C 1.53034 * 109.50182 * 299.99704 * 9 7 2 12 12 N 1.46848 * 109.52504 * 180.87964 * 11 9 7 13 13 C 1.46847 * 111.19556 * 61.74015 * 12 11 9 14 14 C 1.53044 * 109.52516 * 298.25761 * 13 12 11 15 15 C 1.53118 * 109.50260 * 180.19245 * 9 7 2 16 16 H 1.08992 * 109.52406 * 57.68755 * 15 9 7 17 17 O 1.42896 * 109.52216 * 297.49804 * 15 9 7 18 18 H 0.96999 * 119.99977 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46341 * 60.86416 * 11 9 7 20 20 H 1.09003 * 109.45147 * 300.89041 * 11 9 7 21 21 H 1.00901 * 111.00066 * 185.83397 * 12 11 9 22 22 H 1.08999 * 109.46628 * 58.27319 * 13 12 11 23 23 H 1.09003 * 109.46158 * 178.24166 * 13 12 11 24 24 H 1.08996 * 109.50067 * 299.23984 * 14 13 12 25 25 H 1.08999 * 109.53710 * 179.14269 * 14 13 12 26 26 H 0.96710 * 114.00156 * 180.02562 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8757 -0.6825 0.8910 11 6 4.0229 -0.4720 -1.2486 12 7 5.4912 -0.4901 -1.2592 13 6 6.0049 -1.8648 -1.3124 14 6 5.5527 -2.6284 -0.0656 15 6 4.0227 -2.6374 -0.0056 16 1 3.6270 -3.1606 -0.8760 17 8 3.5955 -3.2999 1.1863 18 1 -0.4850 0.8400 -0.0004 19 1 3.6725 0.5601 -1.2404 20 1 3.6470 -0.9762 -2.1389 21 1 5.8541 0.0613 -2.0223 22 1 5.6197 -2.3623 -2.2025 23 1 7.0941 -1.8443 -1.3507 24 1 5.9490 -2.1394 0.8242 25 1 5.9211 -3.6532 -0.1122 26 1 3.8848 -4.2205 1.2498 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233553.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = -49.581085 kcal Electronic energy + Delta-G solvation = -10461.878824 eV Core-core repulsion = 8540.310096 eV Total energy + Delta-G solvation = -1921.568728 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.36734 -35.17414 -32.90497 -30.29529 -30.05949 -24.72300 -22.79005 -21.45288 -18.95088 -16.78989 -16.65016 -15.79313 -14.17686 -13.97835 -13.65085 -13.55135 -12.97591 -12.34278 -12.00484 -11.43564 -11.04568 -10.89190 -10.57545 -10.20140 -9.81831 -9.40290 -9.05231 -8.80808 -8.50280 -7.95147 -6.00895 -3.98904 3.28576 3.43023 3.50598 4.45784 4.71440 5.01001 5.32890 5.34687 5.55457 5.62361 5.93937 6.06993 6.12450 6.18238 6.40306 6.59888 6.74199 6.92542 7.30172 7.62075 7.83189 7.86385 8.44895 8.63403 9.06586 9.60364 11.12497 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.050613 B = 0.021034 C = 0.016198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.084196 B = 1330.881497 C = 1728.181743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.025 3.975 10 H 0.042 0.958 11 C 0.055 3.945 12 N -0.697 5.697 13 C 0.066 3.934 14 C -0.152 4.152 15 C 0.121 3.879 16 H 0.042 0.958 17 O -0.550 6.550 18 H 0.263 0.737 19 H 0.064 0.936 20 H 0.031 0.969 21 H 0.331 0.669 22 H 0.025 0.975 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.770 -3.037 -2.842 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.182 1.182 7 C -0.540 4.540 8 H 0.095 0.905 9 C 0.006 3.994 10 H 0.060 0.940 11 C -0.073 4.073 12 N -0.328 5.328 13 C -0.064 4.064 14 C -0.190 4.190 15 C 0.062 3.938 16 H 0.060 0.940 17 O -0.352 6.352 18 H 0.073 0.927 19 H 0.082 0.918 20 H 0.049 0.951 21 H 0.147 0.853 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 10.380 -2.288 -2.037 10.823 hybrid contribution 0.446 0.187 -1.182 1.277 sum 10.826 -2.101 -3.219 11.488 Atomic orbital electron populations 1.69894 1.06235 1.26801 1.51117 1.25039 0.94769 0.98946 0.94729 0.86946 0.80500 0.83661 0.77833 1.20871 1.22356 1.18197 1.20962 0.88318 0.94629 1.50049 0.90527 1.19155 0.96736 0.89708 0.93797 0.94038 1.22560 0.84479 1.00570 0.99729 1.60425 1.10295 1.11838 1.50193 1.21751 0.98653 0.89407 0.96561 1.22409 0.98668 0.98911 0.99058 1.21826 0.90052 0.95625 0.86320 0.94014 1.86746 1.78744 1.27215 1.42503 0.92739 0.91806 0.95103 0.85269 0.95678 0.91561 0.90832 0.92539 0.80107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.38 13.96 55.43 0.77 -27.61 15 2 C 0.07 1.97 5.45 -17.82 -0.10 1.88 15 3 Si 0.88 22.53 24.36 -169.99 -4.14 18.38 15 4 H -0.28 -6.88 6.88 56.52 0.39 -6.49 15 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 15 6 H -0.26 -6.49 6.53 56.52 0.37 -6.12 15 7 C -0.50 -14.73 8.86 -34.44 -0.31 -15.04 15 8 H 0.08 2.46 7.99 -52.49 -0.42 2.04 15 9 C 0.03 0.63 1.58 -91.69 -0.14 0.49 15 10 H 0.04 1.12 7.21 -51.93 -0.37 0.75 15 11 C 0.05 1.22 5.30 -3.83 -0.02 1.20 15 12 N -0.70 -12.82 6.85 -113.81 -0.78 -13.60 15 13 C 0.07 1.04 6.55 -3.83 -0.03 1.02 15 14 C -0.15 -2.57 5.72 -26.65 -0.15 -2.72 15 15 C 0.12 2.54 2.89 -26.61 -0.08 2.46 15 16 H 0.04 0.88 8.14 -51.93 -0.42 0.45 15 17 O -0.55 -11.60 13.02 -35.23 -0.46 -12.06 15 18 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 19 H 0.06 1.50 3.29 -51.93 -0.17 1.33 15 20 H 0.03 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.33 5.14 8.90 -39.29 -0.35 4.79 15 22 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 15 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.36 5.33 9.09 45.56 0.41 5.75 15 LS Contribution 208.69 15.07 3.14 3.14 Total: -1.00 -32.93 208.69 -4.90 -37.83 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -2.62 Total: 4.62 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.82 Total: -10.71 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.01 Total: -41.21 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.46 Total: -12.06 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.38 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -32.93 -4.90 -37.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233553.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.756 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds