Wall clock time and date at job start Mon Mar 30 2020 02:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47159 * 270.00090 * 3 2 1 5 5 H 1.48501 * 109.47234 * 30.00321 * 3 2 1 6 6 H 1.48504 * 109.47424 * 150.00141 * 3 2 1 7 7 C 1.37881 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00013 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00119 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.53598 * 60.09052 * 9 7 2 11 11 C 1.53034 * 109.50182 * 299.99704 * 9 7 2 12 12 N 1.46848 * 109.52504 * 180.87964 * 11 9 7 13 13 C 1.46847 * 111.19556 * 61.74015 * 12 11 9 14 14 C 1.53044 * 109.52516 * 298.25761 * 13 12 11 15 15 C 1.53118 * 109.50260 * 180.19245 * 9 7 2 16 16 H 1.08992 * 109.52406 * 57.68755 * 15 9 7 17 17 O 1.42896 * 109.52216 * 297.49804 * 15 9 7 18 18 H 0.96999 * 119.99977 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46341 * 60.86416 * 11 9 7 20 20 H 1.09003 * 109.45147 * 300.89041 * 11 9 7 21 21 H 1.00901 * 111.00066 * 185.83397 * 12 11 9 22 22 H 1.08999 * 109.46628 * 58.27319 * 13 12 11 23 23 H 1.09003 * 109.46158 * 178.24166 * 13 12 11 24 24 H 1.08996 * 109.50067 * 299.23984 * 14 13 12 25 25 H 1.08999 * 109.53710 * 179.14269 * 14 13 12 26 26 H 0.96710 * 114.00156 * 180.02562 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8757 -0.6825 0.8910 11 6 4.0229 -0.4720 -1.2486 12 7 5.4912 -0.4901 -1.2592 13 6 6.0049 -1.8648 -1.3124 14 6 5.5527 -2.6284 -0.0656 15 6 4.0227 -2.6374 -0.0056 16 1 3.6270 -3.1606 -0.8760 17 8 3.5955 -3.2999 1.1863 18 1 -0.4850 0.8400 -0.0004 19 1 3.6725 0.5601 -1.2404 20 1 3.6470 -0.9762 -2.1389 21 1 5.8541 0.0613 -2.0223 22 1 5.6197 -2.3623 -2.2025 23 1 7.0941 -1.8443 -1.3507 24 1 5.9490 -2.1394 0.8242 25 1 5.9211 -3.6532 -0.1122 26 1 3.8848 -4.2205 1.2498 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233553.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:09 Heat of formation + Delta-G solvation = -78.881456 kcal Electronic energy + Delta-G solvation = -10463.149384 eV Core-core repulsion = 8540.310096 eV Total energy + Delta-G solvation = -1922.839287 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.96536 -36.76161 -35.01996 -32.20565 -31.56637 -26.70703 -24.41194 -23.10480 -20.62175 -18.92188 -18.28583 -17.50295 -16.01715 -15.52555 -15.31151 -15.22612 -14.86440 -14.09415 -13.60021 -13.08355 -12.96152 -12.49400 -12.23417 -12.04751 -11.74297 -11.40082 -10.92727 -10.72195 -10.50469 -9.39022 -8.31257 -6.34735 1.25544 1.35798 1.48704 2.30809 2.99502 3.36581 3.57353 3.99084 4.01258 4.25315 4.47001 4.52392 4.63393 4.72472 4.96708 5.03494 5.08419 5.25538 5.56727 5.62759 6.00903 6.33568 6.56851 6.71888 7.13320 7.29300 8.86056 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.050613 B = 0.021034 C = 0.016198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.084196 B = 1330.881497 C = 1728.181743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.259 1.259 5 H -0.296 1.296 6 H -0.251 1.251 7 C -0.510 4.510 8 H 0.030 0.970 9 C 0.021 3.979 10 H 0.019 0.981 11 C 0.064 3.936 12 N -0.700 5.700 13 C 0.062 3.938 14 C -0.142 4.142 15 C 0.117 3.883 16 H 0.037 0.963 17 O -0.579 6.579 18 H 0.266 0.734 19 H 0.051 0.949 20 H 0.028 0.972 21 H 0.351 0.649 22 H 0.035 0.965 23 H 0.105 0.895 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.499 -2.738 -3.587 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.175 1.175 7 C -0.548 4.548 8 H 0.048 0.952 9 C 0.001 3.999 10 H 0.037 0.963 11 C -0.065 4.065 12 N -0.333 5.333 13 C -0.066 4.066 14 C -0.180 4.180 15 C 0.059 3.941 16 H 0.055 0.945 17 O -0.385 6.385 18 H 0.075 0.925 19 H 0.069 0.931 20 H 0.046 0.954 21 H 0.170 0.830 22 H 0.054 0.946 23 H 0.123 0.877 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 13.144 -2.018 -2.801 13.590 hybrid contribution -0.441 -0.045 -0.910 1.012 sum 12.703 -2.063 -3.711 13.394 Atomic orbital electron populations 1.70050 1.08155 1.28026 1.52818 1.25941 0.95573 1.03062 0.94322 0.85819 0.78965 0.78477 0.79019 1.18460 1.22385 1.17534 1.21220 0.91132 0.92912 1.49583 0.95177 1.19102 0.93614 0.92905 0.94239 0.96288 1.22162 0.87346 0.99128 0.97838 1.60306 1.07409 1.14030 1.51544 1.21934 1.00802 0.87708 0.96205 1.22323 0.94723 1.01563 0.99390 1.21767 0.93225 0.93105 0.86034 0.94506 1.86667 1.79669 1.29508 1.42648 0.92495 0.93057 0.95356 0.82991 0.94635 0.87732 0.91731 0.88595 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.62 13.96 21.45 0.30 -61.32 15 2 C 0.01 0.46 5.45 84.66 0.46 0.92 15 3 Si 0.95 46.90 24.36 68.60 1.67 48.57 15 4 H -0.26 -11.75 6.88 99.48 0.68 -11.06 15 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 15 6 H -0.25 -12.03 6.53 99.48 0.65 -11.38 15 7 C -0.51 -30.91 8.86 25.60 0.23 -30.69 15 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 15 9 C 0.02 1.03 1.58 -11.49 -0.02 1.01 15 10 H 0.02 1.02 7.21 -2.39 -0.02 1.00 15 11 C 0.06 2.75 5.30 86.32 0.46 3.20 15 12 N -0.70 -23.21 6.85 -513.99 -3.52 -26.73 15 13 C 0.06 1.69 6.55 86.33 0.57 2.25 15 14 C -0.14 -4.28 5.72 30.65 0.18 -4.10 15 15 C 0.12 4.81 2.89 30.67 0.09 4.90 15 16 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 17 O -0.58 -24.20 13.02 -148.98 -1.94 -26.13 15 18 H 0.27 16.07 8.31 -92.71 -0.77 15.30 15 19 H 0.05 2.30 3.29 -2.39 -0.01 2.29 15 20 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.35 9.41 8.90 -89.69 -0.80 8.61 15 22 H 0.04 0.92 8.14 -2.39 -0.02 0.90 15 23 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 25 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.38 10.93 9.09 -74.05 -0.67 10.25 15 Total: -1.00 -73.06 208.69 -1.90 -74.96 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.37 Total: 13.16 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 1.96 Total: -22.50 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -3.22 Total: -88.05 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -1.94 Total: -26.13 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.67 Total: 48.57 kcal Total: -73.06 -1.90 -74.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233553.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.926 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds