Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48502 * 109.46964 * 269.99624 * 3 2 1 5 5 H 1.48500 * 109.47527 * 29.99896 * 3 2 1 6 6 H 1.48507 * 109.47230 * 150.00015 * 3 2 1 7 7 C 1.37881 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99597 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.52580 * 59.86754 * 9 7 2 11 11 C 1.53118 * 109.52114 * 179.97438 * 9 7 2 12 12 C 1.53034 * 109.28068 * 177.55535 * 11 9 7 13 13 N 1.46848 * 109.52504 * 300.82023 * 12 11 9 14 14 C 1.46847 * 111.19556 * 61.74015 * 13 12 11 15 15 C 1.53044 * 109.52516 * 298.25761 * 14 13 12 16 16 H 0.96995 * 120.00001 * 0.02562 * 1 2 3 17 17 H 1.00893 * 111.00271 * 300.12829 * 10 9 7 18 18 H 1.00909 * 111.00001 * 64.08164 * 10 9 7 19 19 H 1.09001 * 109.50624 * 57.61556 * 11 9 7 20 20 H 1.09002 * 109.53418 * 297.51751 * 11 9 7 21 21 H 1.09000 * 109.46341 * 180.80474 * 12 11 9 22 22 H 1.09003 * 109.45147 * 60.83100 * 12 11 9 23 23 H 1.00901 * 111.00066 * 185.83397 * 13 12 11 24 24 H 1.08999 * 109.46628 * 58.27319 * 14 13 12 25 25 H 1.09003 * 109.46158 * 178.24166 * 14 13 12 26 26 H 1.08996 * 109.50067 * 299.23984 * 15 14 13 27 27 H 1.08999 * 109.53710 * 179.14269 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4041 -2.5771 -1.1971 11 6 2.2449 -3.6639 0.0005 12 6 1.4752 -4.9851 0.0621 13 7 0.6544 -5.0186 1.2794 14 6 -0.3393 -3.9375 1.2796 15 6 0.3763 -2.5849 1.2544 16 1 -0.4850 0.8400 -0.0004 17 1 -0.2606 -1.8184 -1.2200 18 1 0.9647 -2.5922 -2.0361 19 1 2.8998 -3.5835 0.8682 20 1 2.8426 -3.6330 -0.9105 21 1 2.1805 -5.8160 0.0767 22 1 0.8308 -5.0709 -0.8128 23 1 0.2105 -5.9178 1.3916 24 1 -0.9752 -4.0283 0.3990 25 1 -0.9520 -4.0075 2.1785 26 1 1.0017 -2.4876 2.1418 27 1 -0.3612 -1.7825 1.2392 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327472.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = -9.137206 kcal Electronic energy + Delta-G solvation = -10486.830475 eV Core-core repulsion = 8664.734187 eV Total energy + Delta-G solvation = -1822.096288 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.80510 -33.80733 -31.14935 -29.59470 -27.70388 -25.31930 -21.84876 -21.30349 -17.78353 -16.56182 -15.44265 -14.72995 -14.05917 -13.25232 -13.20307 -12.91317 -12.34123 -11.45807 -11.29529 -11.02059 -10.83374 -10.51841 -10.13814 -10.11689 -9.80751 -9.34940 -8.86599 -8.46444 -7.70151 -6.98486 -5.97376 -4.15884 3.24851 3.32679 3.36703 4.37368 5.08742 5.20093 5.95127 6.08135 6.29090 6.44907 6.51106 6.56139 6.72367 6.77241 7.00156 7.16843 7.40523 7.64839 7.82109 7.86071 8.08675 8.18862 8.31985 8.78859 9.06218 9.23868 9.56405 10.95537 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.077092 B = 0.016376 C = 0.015458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.114797 B = 1709.428891 C = 1810.915919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.234 3.766 10 N -0.848 5.848 11 C -0.097 4.097 12 C 0.067 3.933 13 N -0.692 5.692 14 C 0.063 3.937 15 C -0.092 4.092 16 H 0.262 0.738 17 H 0.352 0.648 18 H 0.308 0.692 19 H 0.053 0.947 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.321 0.679 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 -4.868 -0.046 4.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.143 3.857 10 N -0.378 5.378 11 C -0.135 4.135 12 C -0.062 4.062 13 N -0.322 5.322 14 C -0.066 4.066 15 C -0.131 4.131 16 H 0.072 0.928 17 H 0.168 0.832 18 H 0.116 0.884 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.137 0.863 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.255 -5.069 0.646 5.117 hybrid contribution 0.331 1.611 -0.862 1.857 sum 0.586 -3.458 -0.216 3.514 Atomic orbital electron populations 1.69676 1.05685 1.26630 1.51257 1.24987 0.94910 0.99041 0.94540 0.86606 0.79977 0.83454 0.77981 1.20843 1.21192 1.20010 1.21962 0.93436 0.91816 1.50661 0.92989 1.18291 0.88932 0.90265 0.88245 1.59466 1.21208 1.53193 1.03928 1.21583 0.97902 0.94361 0.99688 1.21806 0.95771 0.97805 0.90796 1.60403 1.26467 1.05876 1.39465 1.21968 0.93079 0.93152 0.98369 1.21516 0.99773 0.94122 0.97706 0.92750 0.83174 0.88408 0.92807 0.93676 0.93502 0.94703 0.86340 0.94819 0.93653 0.94102 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.21 9.58 55.43 0.53 -23.68 15 2 C 0.07 1.79 5.21 -17.82 -0.09 1.70 15 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 7 C -0.54 -14.62 8.21 -34.44 -0.28 -14.90 15 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 15 9 C 0.23 5.76 0.52 -132.63 -0.07 5.69 15 10 N -0.85 -20.11 7.55 -0.09 0.00 -20.11 15 11 C -0.10 -2.14 4.95 -26.65 -0.13 -2.27 15 12 C 0.07 1.31 6.41 -3.83 -0.02 1.28 15 13 N -0.69 -13.27 6.85 -113.81 -0.78 -14.05 15 14 C 0.06 1.32 6.41 -3.83 -0.02 1.30 15 15 C -0.09 -2.26 4.80 -26.65 -0.13 -2.39 15 16 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 17 H 0.35 9.00 6.92 -39.30 -0.27 8.73 15 18 H 0.31 7.04 8.98 -39.29 -0.35 6.69 15 19 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 20 H 0.04 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.03 0.69 7.69 -51.93 -0.40 0.30 15 23 H 0.32 5.22 8.90 -39.29 -0.35 4.87 15 24 H 0.03 0.73 7.69 -51.93 -0.40 0.33 15 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.09 2.37 6.17 -51.93 -0.32 2.05 15 LS Contribution 214.45 15.07 3.23 3.23 Total: -1.00 -27.01 214.45 -6.54 -33.55 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -3.75 Total: 14.57 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.75 Total: -9.59 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.25 Total: -57.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -27.01 -6.54 -33.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327472.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.410 kcal (2) G-P(sol) polarization free energy of solvation -27.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds