Wall clock time and date at job start Mon Mar 30 2020 01:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48502 * 109.46964 * 269.99624 * 3 2 1 5 5 H 1.48500 * 109.47527 * 29.99896 * 3 2 1 6 6 H 1.48507 * 109.47230 * 150.00015 * 3 2 1 7 7 C 1.37881 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99597 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.52580 * 59.86754 * 9 7 2 11 11 C 1.53118 * 109.52114 * 179.97438 * 9 7 2 12 12 C 1.53034 * 109.28068 * 177.55535 * 11 9 7 13 13 N 1.46848 * 109.52504 * 300.82023 * 12 11 9 14 14 C 1.46847 * 111.19556 * 61.74015 * 13 12 11 15 15 C 1.53044 * 109.52516 * 298.25761 * 14 13 12 16 16 H 0.96995 * 120.00001 * 0.02562 * 1 2 3 17 17 H 1.00893 * 111.00271 * 300.12829 * 10 9 7 18 18 H 1.00909 * 111.00001 * 64.08164 * 10 9 7 19 19 H 1.09001 * 109.50624 * 57.61556 * 11 9 7 20 20 H 1.09002 * 109.53418 * 297.51751 * 11 9 7 21 21 H 1.09000 * 109.46341 * 180.80474 * 12 11 9 22 22 H 1.09003 * 109.45147 * 60.83100 * 12 11 9 23 23 H 1.00901 * 111.00066 * 185.83397 * 13 12 11 24 24 H 1.08999 * 109.46628 * 58.27319 * 14 13 12 25 25 H 1.09003 * 109.46158 * 178.24166 * 14 13 12 26 26 H 1.08996 * 109.50067 * 299.23984 * 15 14 13 27 27 H 1.08999 * 109.53710 * 179.14269 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4041 -2.5771 -1.1971 11 6 2.2449 -3.6639 0.0005 12 6 1.4752 -4.9851 0.0621 13 7 0.6544 -5.0186 1.2794 14 6 -0.3393 -3.9375 1.2796 15 6 0.3763 -2.5849 1.2544 16 1 -0.4850 0.8400 -0.0004 17 1 -0.2606 -1.8184 -1.2200 18 1 0.9647 -2.5922 -2.0361 19 1 2.8998 -3.5835 0.8682 20 1 2.8426 -3.6330 -0.9105 21 1 2.1805 -5.8160 0.0767 22 1 0.8308 -5.0709 -0.8128 23 1 0.2105 -5.9178 1.3916 24 1 -0.9752 -4.0283 0.3990 25 1 -0.9520 -4.0075 2.1785 26 1 1.0017 -2.4876 2.1418 27 1 -0.3612 -1.7825 1.2392 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327472.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:33 Heat of formation + Delta-G solvation = -29.694687 kcal Electronic energy + Delta-G solvation = -10487.721914 eV Core-core repulsion = 8664.734187 eV Total energy + Delta-G solvation = -1822.987727 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.58130 -35.65156 -33.10238 -31.33483 -29.56273 -27.32485 -23.57926 -23.09328 -19.62544 -18.52801 -17.19289 -16.64032 -15.92745 -15.00873 -14.94064 -14.69077 -14.21205 -13.32883 -12.99022 -12.89764 -12.72864 -12.36312 -12.12470 -11.93455 -11.71575 -11.23071 -10.70860 -10.44969 -9.34338 -8.89054 -7.99651 -6.27024 1.36120 1.39565 1.47970 2.39630 3.11383 3.55987 4.33539 4.40384 4.54444 4.66026 4.74597 4.87233 4.98917 5.06657 5.23953 5.36156 5.54427 5.65125 5.88548 5.96087 6.25022 6.33841 6.71306 6.82224 7.08884 7.22450 7.49624 8.88505 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.077092 B = 0.016376 C = 0.015458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.114797 B = 1709.428891 C = 1810.915919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.563 4.563 8 H 0.039 0.961 9 C 0.225 3.775 10 N -0.836 5.836 11 C -0.095 4.095 12 C 0.074 3.926 13 N -0.692 5.692 14 C 0.073 3.927 15 C -0.088 4.088 16 H 0.263 0.737 17 H 0.342 0.658 18 H 0.311 0.689 19 H 0.041 0.959 20 H 0.048 0.952 21 H 0.077 0.923 22 H 0.032 0.968 23 H 0.344 0.656 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -5.600 -0.108 5.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.603 4.603 8 H 0.057 0.943 9 C 0.133 3.867 10 N -0.364 5.364 11 C -0.134 4.134 12 C -0.056 4.056 13 N -0.324 5.324 14 C -0.056 4.056 15 C -0.127 4.127 16 H 0.073 0.927 17 H 0.156 0.844 18 H 0.120 0.880 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.095 0.905 22 H 0.050 0.950 23 H 0.162 0.838 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.390 -5.828 0.581 5.870 hybrid contribution 0.298 1.839 -0.831 2.040 sum 0.688 -3.989 -0.251 4.056 Atomic orbital electron populations 1.69777 1.06423 1.27187 1.51095 1.25586 0.95702 1.01619 0.94288 0.85727 0.78659 0.80156 0.77993 1.20313 1.20848 1.20311 1.22240 0.93068 0.93566 1.51397 0.94288 1.18388 0.89399 0.90401 0.88514 1.59451 1.20748 1.52287 1.03906 1.21515 0.97465 0.95075 0.99327 1.21748 0.96004 0.97085 0.90723 1.60300 1.26165 1.06626 1.39346 1.21766 0.92980 0.91887 0.98964 1.21367 0.98942 0.95584 0.96845 0.92716 0.84401 0.87992 0.94009 0.93309 0.90482 0.94975 0.83786 0.95504 0.91852 0.96012 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 9.58 21.45 0.21 -48.95 15 2 C 0.03 1.51 5.21 84.66 0.44 1.95 15 3 Si 0.95 43.26 29.54 68.60 2.03 45.28 15 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 7 C -0.56 -30.66 8.21 25.60 0.21 -30.45 15 8 H 0.04 2.16 7.74 -2.91 -0.02 2.14 15 9 C 0.22 10.99 0.52 2.86 0.00 10.99 15 10 N -0.84 -39.15 7.55 -154.21 -1.16 -40.31 15 11 C -0.10 -4.10 4.95 30.65 0.15 -3.95 15 12 C 0.07 2.66 6.41 86.32 0.55 3.21 15 13 N -0.69 -24.67 6.85 -513.99 -3.52 -28.19 15 14 C 0.07 2.94 6.41 86.33 0.55 3.50 15 15 C -0.09 -4.31 4.80 30.65 0.15 -4.16 15 16 H 0.26 13.74 8.31 -92.71 -0.77 12.97 15 17 H 0.34 17.42 6.92 -89.70 -0.62 16.80 15 18 H 0.31 14.04 8.98 -89.69 -0.81 13.24 15 19 H 0.04 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.03 1.19 7.69 -2.39 -0.02 1.17 15 23 H 0.34 9.93 8.90 -89.69 -0.80 9.13 15 24 H 0.03 1.12 7.69 -2.39 -0.02 1.10 15 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 27 H 0.06 3.37 6.17 -2.39 -0.01 3.36 15 Total: -1.00 -55.84 214.45 -1.44 -57.28 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -1.05 Total: 33.80 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 2.06 Total: -18.91 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.48 Total: -117.45 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -55.84 -1.44 -57.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327472.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.584 kcal (2) G-P(sol) polarization free energy of solvation -55.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds