Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47843 * 110.99640 * 2 1 4 4 C 1.54916 * 104.79337 * 146.36598 * 3 2 1 5 5 C 1.55398 * 101.74107 * 323.02060 * 4 3 2 6 6 N 1.46897 * 110.67815 * 277.17705 * 5 4 3 7 7 C 1.50693 * 110.84773 * 153.86113 * 5 4 3 8 8 H 1.08008 * 119.99842 * 5.01461 * 7 5 4 9 9 C 1.37876 * 120.00587 * 185.00869 * 7 5 4 10 10 N 1.31520 * 119.99438 * 0.02562 * 9 7 5 11 11 Si 1.86793 * 120.00370 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47364 * 90.00530 * 11 9 7 13 13 H 1.48507 * 109.47089 * 210.00174 * 11 9 7 14 14 H 1.48494 * 109.47260 * 329.99993 * 11 9 7 15 15 C 1.47439 * 111.00045 * 120.84708 * 2 1 3 16 16 H 1.08997 * 109.46916 * 299.15463 * 1 2 3 17 17 H 1.08998 * 109.47467 * 59.15419 * 1 2 3 18 18 H 1.09001 * 109.46967 * 179.15488 * 1 2 3 19 19 H 1.08996 * 110.37823 * 265.19398 * 3 2 1 20 20 H 1.09001 * 110.37314 * 27.42672 * 3 2 1 21 21 H 1.08995 * 110.98807 * 81.01940 * 4 3 2 22 22 H 1.08997 * 110.99076 * 204.80412 * 4 3 2 23 23 H 1.00900 * 111.00295 * 174.89191 * 6 5 4 24 24 H 1.00906 * 111.00282 * 298.84591 * 6 5 4 25 25 H 0.97005 * 119.99761 * 179.97438 * 10 9 7 26 26 H 1.09002 * 109.88998 * 356.14887 * 15 2 1 27 27 H 1.09003 * 109.88733 * 117.17548 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9182 0.2788 1.9328 6 7 2.1906 0.9414 3.0235 7 6 4.1399 -0.4297 2.4587 8 1 5.1224 -0.1355 2.1200 9 6 4.0035 -1.4534 3.3722 10 7 2.8070 -1.8118 3.7842 11 14 5.5178 -2.3311 4.0245 12 1 6.0032 -1.6396 5.2457 13 1 5.1709 -3.7365 4.3563 14 1 6.5831 -2.3153 2.9901 15 6 1.9974 -0.7058 1.1817 16 1 -0.3633 0.5006 0.8974 17 1 -0.3634 0.5269 -0.8823 18 1 -0.3633 -1.0276 -0.0152 19 1 2.2147 1.7039 -1.0182 20 1 1.2880 2.0595 0.4707 21 1 4.1302 0.9282 0.2243 22 1 3.5498 2.2721 1.2635 23 1 1.8649 0.2690 3.7017 24 1 2.7611 1.6492 3.4612 25 1 2.7110 -2.5323 4.4266 26 1 1.1756 -1.0121 1.8289 27 1 2.5674 -1.5801 0.8673 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327474.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -1.134899 kcal Electronic energy + Delta-G solvation = -10404.050802 eV Core-core repulsion = 8582.301520 eV Total energy + Delta-G solvation = -1821.749282 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.01749 -33.72408 -31.29724 -29.04039 -26.89673 -25.38903 -23.50440 -19.98256 -18.93921 -16.44538 -14.87523 -14.74716 -14.06250 -13.83376 -13.20230 -12.64138 -12.12086 -11.81999 -11.29788 -11.02472 -10.74620 -10.69698 -10.55625 -10.14173 -10.02919 -9.69395 -9.18256 -8.60235 -7.41094 -7.15281 -6.06735 -4.20885 3.23370 3.31326 3.35168 4.34338 5.05918 5.16057 5.81645 5.90075 6.06963 6.23751 6.32709 6.37935 6.45687 6.53054 6.78492 7.01423 7.17683 7.34741 7.65830 7.77969 7.90828 8.09551 8.21705 8.74744 8.95785 9.09282 9.49661 10.91963 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.070321 B = 0.016184 C = 0.015280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.077740 B = 1729.712470 C = 1832.011947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.544 5.544 3 C 0.051 3.949 4 C -0.116 4.116 5 C 0.221 3.779 6 N -0.847 5.847 7 C -0.538 4.538 8 H 0.056 0.944 9 C 0.067 3.933 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.079 3.921 16 H 0.025 0.975 17 H 0.050 0.950 18 H 0.056 0.944 19 H 0.055 0.945 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.351 0.649 24 H 0.313 0.687 25 H 0.264 0.736 26 H 0.051 0.949 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 2.969 -2.994 4.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.269 5.269 3 C -0.077 4.077 4 C -0.155 4.155 5 C 0.129 3.871 6 N -0.376 5.376 7 C -0.578 4.578 8 H 0.074 0.926 9 C -0.135 4.135 10 N -0.531 5.531 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.049 4.049 16 H 0.044 0.956 17 H 0.069 0.931 18 H 0.075 0.925 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.166 0.834 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.030 2.783 -3.909 5.210 hybrid contribution 1.264 -0.605 1.797 2.279 sum -0.767 2.179 -2.112 3.129 Atomic orbital electron populations 1.22392 0.89731 1.00718 0.99347 1.63713 1.06435 1.14059 1.42670 1.22854 0.96662 0.90040 0.98149 1.22739 0.95886 0.99179 0.97676 1.19478 0.90561 0.88953 0.88135 1.59437 1.42858 1.18692 1.16614 1.21748 0.93457 1.17729 1.24903 0.92592 1.25021 0.96029 0.96382 0.96064 1.69797 1.21371 1.29717 1.32174 0.86559 0.83217 0.78894 0.79113 1.20784 1.21158 1.19882 1.22736 0.97740 0.96669 0.87746 0.95625 0.93116 0.92542 0.92679 0.94263 0.91927 0.92806 0.83383 0.87840 0.92655 0.93060 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.12 60.07 0.55 1.06 15 2 N -0.54 -11.76 5.44 -239.51 -1.30 -13.06 15 3 C 0.05 1.03 6.71 -2.29 -0.02 1.01 15 4 C -0.12 -2.53 6.19 -24.45 -0.15 -2.68 15 5 C 0.22 5.45 0.67 -130.79 -0.09 5.36 15 6 N -0.85 -20.12 8.91 1.39 0.01 -20.11 15 7 C -0.54 -14.46 8.09 -34.44 -0.28 -14.74 15 8 H 0.06 1.52 7.78 -52.48 -0.41 1.11 15 9 C 0.07 1.80 5.27 -17.82 -0.09 1.71 15 10 N -0.89 -24.24 10.83 55.43 0.60 -23.64 15 11 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 15 C 0.08 1.94 5.23 -2.84 -0.01 1.92 15 16 H 0.03 0.49 8.10 -51.93 -0.42 0.07 15 17 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 18 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 19 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 20 H 0.04 0.78 7.78 -51.93 -0.40 0.38 15 21 H 0.06 1.37 8.04 -51.93 -0.42 0.96 15 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.35 8.95 7.25 -39.29 -0.28 8.66 15 24 H 0.31 7.09 9.06 -39.29 -0.36 6.73 15 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 26 H 0.05 1.34 7.32 -51.93 -0.38 0.96 15 27 H 0.07 1.76 7.81 -51.93 -0.41 1.35 15 LS Contribution 221.36 15.07 3.34 3.34 Total: -1.00 -27.00 221.36 -6.37 -33.37 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -3.90 Total: 10.56 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.09 Total: -6.37 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.69 Total: -56.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -27.00 -6.37 -33.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327474.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.234 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds