Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47843 * 110.99640 * 2 1 4 4 C 1.54916 * 104.79337 * 146.36598 * 3 2 1 5 5 C 1.55398 * 101.74107 * 323.02060 * 4 3 2 6 6 N 1.46897 * 110.67815 * 277.17705 * 5 4 3 7 7 C 1.50693 * 110.84773 * 153.86113 * 5 4 3 8 8 H 1.08008 * 119.99842 * 5.01461 * 7 5 4 9 9 C 1.37876 * 120.00587 * 185.00869 * 7 5 4 10 10 N 1.31520 * 119.99438 * 0.02562 * 9 7 5 11 11 Si 1.86793 * 120.00370 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47364 * 90.00530 * 11 9 7 13 13 H 1.48507 * 109.47089 * 210.00174 * 11 9 7 14 14 H 1.48494 * 109.47260 * 329.99993 * 11 9 7 15 15 C 1.47439 * 111.00045 * 120.84708 * 2 1 3 16 16 H 1.08997 * 109.46916 * 299.15463 * 1 2 3 17 17 H 1.08998 * 109.47467 * 59.15419 * 1 2 3 18 18 H 1.09001 * 109.46967 * 179.15488 * 1 2 3 19 19 H 1.08996 * 110.37823 * 265.19398 * 3 2 1 20 20 H 1.09001 * 110.37314 * 27.42672 * 3 2 1 21 21 H 1.08995 * 110.98807 * 81.01940 * 4 3 2 22 22 H 1.08997 * 110.99076 * 204.80412 * 4 3 2 23 23 H 1.00900 * 111.00295 * 174.89191 * 6 5 4 24 24 H 1.00906 * 111.00282 * 298.84591 * 6 5 4 25 25 H 0.97005 * 119.99761 * 179.97438 * 10 9 7 26 26 H 1.09002 * 109.88998 * 356.14887 * 15 2 1 27 27 H 1.09003 * 109.88733 * 117.17548 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3048 1.3027 0.8296 5 6 2.9182 0.2788 1.9328 6 7 2.1906 0.9414 3.0235 7 6 4.1399 -0.4297 2.4587 8 1 5.1224 -0.1355 2.1200 9 6 4.0035 -1.4534 3.3722 10 7 2.8070 -1.8118 3.7842 11 14 5.5178 -2.3311 4.0245 12 1 6.0032 -1.6396 5.2457 13 1 5.1709 -3.7365 4.3563 14 1 6.5831 -2.3153 2.9901 15 6 1.9974 -0.7058 1.1817 16 1 -0.3633 0.5006 0.8974 17 1 -0.3634 0.5269 -0.8823 18 1 -0.3633 -1.0276 -0.0152 19 1 2.2147 1.7039 -1.0182 20 1 1.2880 2.0595 0.4707 21 1 4.1302 0.9282 0.2243 22 1 3.5498 2.2721 1.2635 23 1 1.8649 0.2690 3.7017 24 1 2.7611 1.6492 3.4612 25 1 2.7110 -2.5323 4.4266 26 1 1.1756 -1.0121 1.8289 27 1 2.5674 -1.5801 0.8673 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327474.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -21.677423 kcal Electronic energy + Delta-G solvation = -10404.941593 eV Core-core repulsion = 8582.301520 eV Total energy + Delta-G solvation = -1822.640072 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.80518 -35.60983 -33.23014 -30.78096 -28.78932 -27.26925 -25.26461 -21.70102 -20.84953 -18.44130 -16.80626 -16.49595 -15.83299 -15.72894 -14.88158 -14.44700 -13.81930 -13.62445 -13.13820 -12.88284 -12.72148 -12.45699 -12.25748 -11.93439 -11.76867 -11.59536 -11.08470 -10.62281 -9.23928 -9.02390 -8.08458 -6.30741 1.37342 1.40668 1.49421 2.38872 3.09555 3.39005 4.12795 4.19599 4.48887 4.52186 4.65537 4.72970 4.90583 4.96065 5.00610 5.23435 5.35126 5.46536 5.67079 5.72124 6.08354 6.25453 6.41369 6.72503 6.98489 7.11321 7.43412 8.86602 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.070321 B = 0.016184 C = 0.015280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.077740 B = 1729.712470 C = 1832.011947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.552 5.552 3 C 0.056 3.944 4 C -0.113 4.113 5 C 0.208 3.792 6 N -0.837 5.837 7 C -0.558 4.558 8 H 0.047 0.953 9 C 0.027 3.973 10 N -0.909 5.909 11 Si 0.953 3.047 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.093 3.907 16 H 0.017 0.983 17 H 0.082 0.918 18 H 0.059 0.941 19 H 0.082 0.918 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.340 0.660 24 H 0.318 0.682 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 3.571 -3.513 5.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.277 5.277 3 C -0.071 4.071 4 C -0.152 4.152 5 C 0.116 3.884 6 N -0.365 5.365 7 C -0.598 4.598 8 H 0.065 0.935 9 C -0.173 4.173 10 N -0.548 5.548 11 Si 0.779 3.221 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.035 4.035 16 H 0.035 0.965 17 H 0.100 0.900 18 H 0.078 0.922 19 H 0.101 0.899 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.154 0.846 24 H 0.128 0.872 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.974 3.405 -4.438 5.932 hybrid contribution 1.226 -0.782 1.935 2.421 sum -0.749 2.624 -2.503 3.702 Atomic orbital electron populations 1.22447 0.87729 1.01432 1.00396 1.63675 1.08348 1.14857 1.40772 1.22896 0.95584 0.89205 0.99448 1.22697 0.96706 0.98869 0.96927 1.19592 0.89976 0.89874 0.88996 1.59423 1.42659 1.18220 1.16163 1.22007 0.93904 1.18488 1.25431 0.93489 1.25654 0.98418 0.96965 0.96307 1.69893 1.22699 1.29874 1.32315 0.85647 0.80189 0.77798 0.78471 1.20218 1.21002 1.19944 1.22390 0.96605 0.96101 0.88411 0.96450 0.89957 0.92238 0.89931 0.93769 0.92465 0.91531 0.84610 0.87222 0.92675 0.95238 0.94803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 9.12 127.69 1.16 2.17 15 2 N -0.55 -22.97 5.44 -911.68 -4.96 -27.93 15 3 C 0.06 2.12 6.71 86.78 0.58 2.70 15 4 C -0.11 -4.77 6.19 32.07 0.20 -4.57 15 5 C 0.21 10.17 0.67 4.05 0.00 10.18 15 6 N -0.84 -39.29 8.91 -149.50 -1.33 -40.62 15 7 C -0.56 -29.99 8.09 25.60 0.21 -29.78 15 8 H 0.05 2.54 7.78 -2.91 -0.02 2.52 15 9 C 0.03 1.45 5.27 84.65 0.45 1.90 15 10 N -0.91 -49.60 10.83 21.45 0.23 -49.36 15 11 Si 0.95 42.86 29.54 68.60 2.03 44.88 15 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 14 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 15 C 0.09 4.61 5.23 86.65 0.45 5.06 15 16 H 0.02 0.63 8.10 -2.39 -0.02 0.61 15 17 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 18 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 19 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 20 H 0.04 1.63 7.78 -2.39 -0.02 1.61 15 21 H 0.06 2.44 8.04 -2.39 -0.02 2.42 15 22 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.34 17.37 7.25 -89.69 -0.65 16.72 15 24 H 0.32 14.16 9.06 -89.69 -0.81 13.35 15 25 H 0.26 13.85 8.31 -92.70 -0.77 13.08 15 26 H 0.03 1.55 7.32 -2.39 -0.02 1.53 15 27 H 0.03 1.84 7.81 -2.39 -0.02 1.83 15 Total: -1.00 -55.77 221.36 -1.29 -57.06 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.31 Total: 28.32 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.05 Total: -12.34 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -6.06 Total: -117.92 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -55.77 -1.29 -57.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327474.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.381 kcal (2) G-P(sol) polarization free energy of solvation -55.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds