Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48560 * 111.00080 * 2 1 4 4 C 1.54378 * 104.59509 * 200.95853 * 3 2 1 5 5 C 1.54262 * 105.06299 * 23.85755 * 4 3 2 6 6 N 1.46896 * 110.32264 * 118.99394 * 5 4 3 7 7 C 1.50701 * 110.32389 * 241.10547 * 5 4 3 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 5 4 9 9 C 1.37871 * 119.99694 * 180.27653 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47209 * 89.99886 * 11 9 7 13 13 H 1.48501 * 109.47358 * 209.99377 * 11 9 7 14 14 H 1.48496 * 109.47341 * 329.99989 * 11 9 7 15 15 C 1.48565 * 111.00084 * 244.58725 * 2 1 3 16 16 H 1.09001 * 109.46942 * 60.12138 * 1 2 3 17 17 H 1.08999 * 109.46928 * 180.11992 * 1 2 3 18 18 H 1.08995 * 109.46764 * 300.12456 * 1 2 3 19 19 H 1.09002 * 110.40873 * 82.18171 * 3 2 1 20 20 H 1.08996 * 110.41225 * 319.73806 * 3 2 1 21 21 H 1.08998 * 110.32900 * 264.95820 * 4 3 2 22 22 H 1.09004 * 110.32087 * 142.75428 * 4 3 2 23 23 H 1.00907 * 110.99437 * 181.43047 * 6 5 4 24 24 H 1.00902 * 111.00079 * 305.37837 * 6 5 4 25 25 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 26 26 H 1.08995 * 110.41490 * 40.25749 * 15 2 1 27 27 H 1.09001 * 110.40732 * 277.81966 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3586 6 7 3.7831 0.2281 -2.7596 7 6 4.4180 -1.0430 -0.7732 8 1 4.9916 -0.7815 0.1037 9 6 4.5820 -2.2794 -1.3610 10 7 3.8838 -2.5977 -2.4290 11 14 5.7959 -3.5025 -0.6400 12 1 5.1069 -4.3487 0.3672 13 1 6.3346 -4.3629 -1.7239 14 1 6.9113 -2.7686 0.0099 15 6 2.0014 -0.5952 -1.2528 16 1 -0.3633 0.5120 -0.8911 17 1 -0.3633 -1.0277 0.0022 18 1 -0.3633 0.5158 0.8888 19 1 2.0079 1.7916 1.0121 20 1 1.4099 2.0212 -0.6602 21 1 4.1484 1.1748 0.2934 22 1 3.6937 2.0996 -1.1698 23 1 3.7633 -0.6153 -3.3132 24 1 3.1692 0.9291 -3.1465 25 1 3.9995 -3.4673 -2.8427 26 1 1.4099 -0.2712 -2.1090 27 1 2.0079 -1.6830 -1.1839 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = 6.799404 kcal Electronic energy + Delta-G solvation = -10393.401488 eV Core-core repulsion = 8571.996264 eV Total energy + Delta-G solvation = -1821.405224 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.13310 -33.75671 -31.37622 -29.20207 -26.69014 -25.46195 -23.44895 -20.26846 -18.94207 -16.30025 -15.03081 -14.76392 -14.22767 -13.58685 -13.41642 -12.52792 -12.38805 -11.66596 -11.46139 -11.27719 -10.84359 -10.57630 -10.41633 -10.27189 -10.03563 -9.54907 -8.96935 -8.48976 -7.65654 -7.02910 -6.02411 -4.02616 3.35306 3.41218 3.45739 4.47410 4.92259 5.26363 5.66954 5.75268 5.89809 6.02681 6.15694 6.27306 6.41261 6.50749 6.60539 6.85883 6.98358 7.08831 7.63376 7.66277 7.89867 7.96513 8.36450 8.76077 9.09935 9.25771 9.63604 11.07554 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057217 B = 0.017095 C = 0.016290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.250663 B = 1637.552632 C = 1718.469123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.032 3.968 4 C -0.114 4.114 5 C 0.242 3.758 6 N -0.839 5.839 7 C -0.476 4.476 8 H 0.060 0.940 9 C 0.064 3.936 10 N -0.904 5.904 11 Si 0.898 3.102 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.025 3.975 16 H 0.015 0.985 17 H 0.061 0.939 18 H 0.056 0.944 19 H 0.064 0.936 20 H 0.025 0.975 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.360 0.640 24 H 0.291 0.709 25 H 0.262 0.738 26 H 0.005 0.995 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 3.944 1.892 6.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.234 5.234 3 C -0.097 4.097 4 C -0.153 4.153 5 C 0.149 3.851 6 N -0.371 5.371 7 C -0.515 4.515 8 H 0.078 0.922 9 C -0.136 4.136 10 N -0.545 5.545 11 Si 0.727 3.273 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.105 4.105 16 H 0.033 0.967 17 H 0.080 0.920 18 H 0.075 0.925 19 H 0.083 0.917 20 H 0.044 0.956 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.178 0.822 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.244 3.707 2.518 5.532 hybrid contribution -0.850 -0.642 -0.623 1.234 sum -4.094 3.064 1.895 5.454 Atomic orbital electron populations 1.22451 0.90383 1.01206 0.99210 1.65365 1.05790 1.14367 1.37881 1.23090 0.96833 0.90430 0.99322 1.22464 0.94192 0.98946 0.99674 1.19054 0.89873 0.90120 0.86018 1.59406 1.56935 1.15823 1.04897 1.21033 1.21732 0.97633 1.11136 0.92223 1.24958 0.95741 0.98042 0.94845 1.69624 1.41517 1.22192 1.21136 0.86495 0.81411 0.80918 0.78517 1.20843 1.21393 1.19944 1.24094 0.97797 1.02087 0.86546 0.96652 0.91993 0.92516 0.91730 0.95645 0.91579 0.92713 0.82161 0.89959 0.92853 0.97680 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.53 60.06 0.57 0.87 15 2 N -0.51 -10.98 5.66 -238.23 -1.35 -12.33 15 3 C 0.03 0.62 6.49 -2.18 -0.01 0.60 15 4 C -0.11 -2.50 6.37 -25.35 -0.16 -2.66 15 5 C 0.24 6.03 0.89 -131.37 -0.12 5.92 15 6 N -0.84 -20.46 8.81 0.93 0.01 -20.45 15 7 C -0.48 -13.22 8.20 -34.44 -0.28 -13.50 15 8 H 0.06 1.67 7.36 -52.49 -0.39 1.28 15 9 C 0.06 1.77 5.02 -17.82 -0.09 1.68 15 10 N -0.90 -24.99 10.22 55.43 0.57 -24.43 15 11 Si 0.90 21.62 29.54 -169.99 -5.02 16.59 15 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 15 C 0.02 0.59 5.34 -2.18 -0.01 0.58 15 16 H 0.01 0.26 7.97 -51.93 -0.41 -0.16 15 17 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 18 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 19 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 20 H 0.03 0.46 7.97 -51.93 -0.41 0.05 15 21 H 0.07 1.47 7.42 -51.93 -0.39 1.08 15 22 H 0.05 1.12 7.93 -51.93 -0.41 0.71 15 23 H 0.36 9.36 6.85 -39.29 -0.27 9.09 15 24 H 0.29 6.34 8.93 -39.29 -0.35 5.99 15 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 26 H 0.00 0.12 7.79 -51.93 -0.40 -0.29 15 27 H 0.09 2.52 6.70 -51.93 -0.35 2.18 15 LS Contribution 219.04 15.07 3.30 3.30 Total: -1.00 -28.10 219.04 -6.38 -34.48 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.79 Total: 9.34 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.10 Total: -6.51 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.77 Total: -57.21 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -28.10 -6.38 -34.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds