Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48560 * 111.00080 * 2 1 4 4 C 1.54378 * 104.59509 * 200.95853 * 3 2 1 5 5 C 1.54262 * 105.06299 * 23.85755 * 4 3 2 6 6 N 1.46896 * 110.32264 * 118.99394 * 5 4 3 7 7 C 1.50701 * 110.32389 * 241.10547 * 5 4 3 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 5 4 9 9 C 1.37871 * 119.99694 * 180.27653 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47209 * 89.99886 * 11 9 7 13 13 H 1.48501 * 109.47358 * 209.99377 * 11 9 7 14 14 H 1.48496 * 109.47341 * 329.99989 * 11 9 7 15 15 C 1.48565 * 111.00084 * 244.58725 * 2 1 3 16 16 H 1.09001 * 109.46942 * 60.12138 * 1 2 3 17 17 H 1.08999 * 109.46928 * 180.11992 * 1 2 3 18 18 H 1.08995 * 109.46764 * 300.12456 * 1 2 3 19 19 H 1.09002 * 110.40873 * 82.18171 * 3 2 1 20 20 H 1.08996 * 110.41225 * 319.73806 * 3 2 1 21 21 H 1.08998 * 110.32900 * 264.95820 * 4 3 2 22 22 H 1.09004 * 110.32087 * 142.75428 * 4 3 2 23 23 H 1.00907 * 110.99437 * 181.43047 * 6 5 4 24 24 H 1.00902 * 111.00079 * 305.37837 * 6 5 4 25 25 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 26 26 H 1.08995 * 110.41490 * 40.25749 * 15 2 1 27 27 H 1.09001 * 110.40732 * 277.81966 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3586 6 7 3.7831 0.2281 -2.7596 7 6 4.4180 -1.0430 -0.7732 8 1 4.9916 -0.7815 0.1037 9 6 4.5820 -2.2794 -1.3610 10 7 3.8838 -2.5977 -2.4290 11 14 5.7959 -3.5025 -0.6400 12 1 5.1069 -4.3487 0.3672 13 1 6.3346 -4.3629 -1.7239 14 1 6.9113 -2.7686 0.0099 15 6 2.0014 -0.5952 -1.2528 16 1 -0.3633 0.5120 -0.8911 17 1 -0.3633 -1.0277 0.0022 18 1 -0.3633 0.5158 0.8888 19 1 2.0079 1.7916 1.0121 20 1 1.4099 2.0212 -0.6602 21 1 4.1484 1.1748 0.2934 22 1 3.6937 2.0996 -1.1698 23 1 3.7633 -0.6153 -3.3132 24 1 3.1692 0.9291 -3.1465 25 1 3.9995 -3.4673 -2.8427 26 1 1.4099 -0.2712 -2.1090 27 1 2.0079 -1.6830 -1.1839 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = -15.016149 kcal Electronic energy + Delta-G solvation = -10394.347481 eV Core-core repulsion = 8571.996264 eV Total energy + Delta-G solvation = -1822.351218 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.87728 -35.61076 -33.33490 -30.91227 -28.56706 -27.29370 -25.18790 -21.94883 -20.82141 -18.29603 -16.99215 -16.42624 -16.02704 -15.38253 -15.04757 -14.34844 -14.09876 -13.43544 -13.30044 -13.02110 -12.71506 -12.34786 -12.13115 -12.01126 -11.81134 -11.49428 -10.92200 -10.56106 -9.30892 -8.92726 -8.09463 -6.16075 1.43604 1.44878 1.54322 2.47224 3.17075 3.34616 4.11629 4.18272 4.37988 4.49426 4.55337 4.63543 4.78214 4.86062 4.94108 5.13786 5.20709 5.31363 5.67470 5.84985 5.95279 6.32832 6.38470 6.72444 7.08753 7.33374 7.53012 8.98275 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057217 B = 0.017095 C = 0.016290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.250663 B = 1637.552632 C = 1718.469123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.531 5.531 3 C 0.039 3.961 4 C -0.113 4.113 5 C 0.227 3.773 6 N -0.842 5.842 7 C -0.501 4.501 8 H 0.047 0.953 9 C 0.023 3.977 10 N -0.917 5.917 11 Si 0.953 3.047 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.039 3.961 16 H 0.024 0.976 17 H 0.059 0.941 18 H 0.084 0.916 19 H 0.087 0.913 20 H 0.045 0.955 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.349 0.651 24 H 0.307 0.693 25 H 0.262 0.738 26 H 0.005 0.995 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 4.636 2.445 6.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.089 4.089 4 C -0.151 4.151 5 C 0.135 3.865 6 N -0.374 5.374 7 C -0.540 4.540 8 H 0.065 0.935 9 C -0.175 4.175 10 N -0.558 5.558 11 Si 0.780 3.220 12 H -0.207 1.207 13 H -0.209 1.209 14 H -0.199 1.199 15 C -0.091 4.091 16 H 0.043 0.957 17 H 0.078 0.922 18 H 0.103 0.897 19 H 0.105 0.895 20 H 0.063 0.937 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.166 0.834 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.748 4.419 3.078 6.561 hybrid contribution -0.720 -0.834 -0.791 1.356 sum -4.468 3.585 2.287 6.168 Atomic orbital electron populations 1.22518 0.87929 1.01777 1.00959 1.65277 1.08299 1.15654 1.36296 1.23096 0.95152 0.89692 1.00985 1.22402 0.95853 0.97760 0.99095 1.19159 0.89699 0.91256 0.86390 1.59323 1.57634 1.15639 1.04773 1.21300 1.22585 0.98923 1.11210 0.93501 1.25587 0.97168 0.99465 0.95292 1.69717 1.42102 1.22361 1.21633 0.85637 0.79520 0.78949 0.77892 1.20673 1.20895 1.19860 1.23706 0.97688 0.99847 0.87898 0.95736 0.92177 0.89741 0.89457 0.93718 0.92620 0.91509 0.83413 0.88291 0.92894 0.97682 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.53 127.69 1.22 1.77 15 2 N -0.53 -21.87 5.66 -907.63 -5.14 -27.00 15 3 C 0.04 1.40 6.49 86.45 0.56 1.96 15 4 C -0.11 -4.74 6.37 31.49 0.20 -4.54 15 5 C 0.23 11.24 0.89 3.68 0.00 11.24 15 6 N -0.84 -40.69 8.81 -150.98 -1.33 -42.02 15 7 C -0.50 -27.95 8.20 25.60 0.21 -27.74 15 8 H 0.05 2.65 7.36 -2.91 -0.02 2.63 15 9 C 0.02 1.29 5.02 84.65 0.42 1.72 15 10 N -0.92 -51.03 10.22 21.45 0.22 -50.81 15 11 Si 0.95 44.45 29.54 68.60 2.03 46.47 15 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 15 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 14 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 15 C 0.04 1.87 5.34 86.45 0.46 2.33 15 16 H 0.02 0.75 7.97 -2.39 -0.02 0.73 15 17 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 18 H 0.08 2.28 8.14 -2.39 -0.02 2.26 15 19 H 0.09 2.78 8.14 -2.39 -0.02 2.76 15 20 H 0.04 1.46 7.97 -2.39 -0.02 1.44 15 21 H 0.05 2.42 7.42 -2.39 -0.02 2.40 15 22 H 0.07 2.60 7.93 -2.39 -0.02 2.58 15 23 H 0.35 18.21 6.85 -89.69 -0.61 17.59 15 24 H 0.31 13.00 8.93 -89.69 -0.80 12.20 15 25 H 0.26 13.99 8.31 -92.71 -0.77 13.22 15 26 H 0.01 0.24 7.79 -2.39 -0.02 0.22 15 27 H 0.05 3.00 6.70 -2.39 -0.02 2.99 15 Total: -1.00 -58.59 219.04 -1.40 -59.99 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.25 Total: 26.63 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.08 Total: -13.26 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.25 Total: -119.83 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -58.59 -1.40 -59.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.970 kcal (2) G-P(sol) polarization free energy of solvation -58.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds