Wall clock time and date at job start Mon Mar 30 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.54425 * 60.00334 * 9 7 2 11 11 C 1.53179 * 109.54345 * 299.82417 * 9 7 2 12 12 C 1.53112 * 109.15491 * 183.24209 * 11 9 7 13 13 O 1.42902 * 109.48627 * 57.47539 * 12 11 9 14 14 C 1.42901 * 114.09856 * 298.88681 * 13 12 11 15 15 C 1.53096 * 109.41667 * 61.15864 * 14 13 12 16 16 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 17 17 H 1.00903 * 111.00003 * 299.99403 * 10 9 7 18 18 H 1.00895 * 111.00475 * 63.95077 * 10 9 7 19 19 H 1.09002 * 109.52622 * 303.05314 * 11 9 7 20 20 H 1.09000 * 109.52719 * 63.25081 * 11 9 7 21 21 H 1.09001 * 109.40500 * 297.48994 * 12 11 9 22 22 H 1.09000 * 109.48713 * 177.50862 * 12 11 9 23 23 H 1.08999 * 109.47973 * 301.17584 * 14 13 12 24 24 H 1.08998 * 109.48976 * 181.14766 * 14 13 12 25 25 H 1.08996 * 109.52377 * 182.48584 * 15 14 13 26 26 H 1.09002 * 109.57032 * 62.32613 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 0.4055 -2.5784 -1.1991 11 6 0.3736 -2.5842 1.2521 12 6 -0.3253 -3.9461 1.2845 13 8 0.6548 -4.9857 1.2550 14 6 1.4722 -4.9839 0.0828 15 6 2.2450 -3.6647 0.0033 16 1 -0.4850 0.8401 0.0004 17 1 -0.2607 -1.8209 -1.2224 18 1 0.9668 -2.5921 -2.0374 19 1 0.9954 -2.4742 2.1407 20 1 -0.3732 -1.7906 1.2284 21 1 -0.9792 -4.0383 0.4173 22 1 -0.9167 -4.0298 2.1962 23 1 0.8418 -5.0897 -0.8001 24 1 2.1757 -5.8151 0.1289 25 1 2.8353 -3.6430 -0.9127 26 1 2.9064 -3.5765 0.8652 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327531.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:22 Heat of formation + Delta-G solvation = -58.907964 kcal Electronic energy + Delta-G solvation = -10613.064197 eV Core-core repulsion = 8691.091025 eV Total energy + Delta-G solvation = -1921.973172 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.37263 -34.74520 -31.57515 -29.91960 -28.30783 -25.75675 -22.46752 -22.15772 -18.23309 -16.62776 -15.11742 -14.88337 -14.55645 -13.98204 -13.77669 -13.16687 -12.34667 -11.68897 -11.41844 -10.99773 -10.93940 -10.74307 -10.32869 -10.16162 -9.94229 -9.29389 -9.11052 -8.78493 -8.35144 -7.10767 -6.03304 -4.22376 3.23149 3.28624 3.31612 4.32520 4.82340 5.13543 5.95578 6.08554 6.23410 6.31725 6.33849 6.53122 6.57171 6.61407 6.89644 7.04292 7.30229 7.58780 7.77833 7.84822 8.17786 8.23560 8.70946 8.97700 9.16619 9.50044 10.89752 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.077357 B = 0.016368 C = 0.015465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.870229 B = 1710.290180 C = 1810.061632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.234 3.766 10 N -0.849 5.849 11 C -0.130 4.130 12 C 0.066 3.934 13 O -0.402 6.402 14 C 0.071 3.929 15 C -0.135 4.135 16 H 0.264 0.736 17 H 0.354 0.646 18 H 0.310 0.690 19 H 0.042 0.958 20 H 0.096 0.904 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -3.802 -0.330 3.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.212 1.212 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.143 3.857 10 N -0.379 5.379 11 C -0.169 4.169 12 C -0.011 4.011 13 O -0.322 6.322 14 C -0.005 4.005 15 C -0.173 4.173 16 H 0.074 0.926 17 H 0.170 0.830 18 H 0.119 0.881 19 H 0.061 0.939 20 H 0.114 0.886 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.201 -4.504 0.133 4.510 hybrid contribution 0.993 2.237 -0.411 2.482 sum 1.194 -2.266 -0.278 2.577 Atomic orbital electron populations 1.69660 1.05711 1.26894 1.50933 1.24992 0.94936 0.99105 0.94393 0.86635 0.79632 0.82963 0.78609 1.21223 1.20293 1.20395 1.21891 0.93409 0.91681 1.51109 0.92948 1.18262 0.88852 0.90378 0.88215 1.59456 1.21104 1.53390 1.03914 1.22099 1.00752 0.95955 0.98079 1.22596 0.90253 0.88355 0.99863 1.87715 1.49440 1.52612 1.42390 1.22398 0.93048 0.96941 0.88153 1.22169 0.98698 0.95993 1.00469 0.92578 0.83000 0.88140 0.93925 0.88598 0.93080 0.91622 0.92964 0.91530 0.92924 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 9.59 55.43 0.53 -23.33 15 2 C 0.07 1.79 5.21 -17.82 -0.09 1.70 15 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 15 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.54 -14.49 8.21 -34.44 -0.28 -14.77 15 8 H 0.05 1.42 7.75 -52.49 -0.41 1.01 15 9 C 0.23 5.71 0.52 -132.57 -0.07 5.64 15 10 N -0.85 -19.76 7.66 -0.04 0.00 -19.76 15 11 C -0.13 -3.15 4.82 -26.58 -0.13 -3.28 15 12 C 0.07 1.40 6.68 37.22 0.25 1.65 15 13 O -0.40 -8.68 10.77 -35.23 -0.38 -9.05 15 14 C 0.07 1.42 6.68 37.21 0.25 1.66 15 15 C -0.13 -2.94 5.00 -26.59 -0.13 -3.07 15 16 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 17 H 0.35 8.86 6.94 -39.29 -0.27 8.59 15 18 H 0.31 6.93 8.98 -39.29 -0.35 6.57 15 19 H 0.04 1.06 8.14 -51.93 -0.42 0.63 15 20 H 0.10 2.50 6.19 -51.93 -0.32 2.18 15 21 H 0.05 1.10 7.75 -51.93 -0.40 0.70 15 22 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 23 H 0.05 1.03 7.75 -51.93 -0.40 0.63 15 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 210.39 15.07 3.17 3.17 Total: -1.00 -26.89 210.39 -5.31 -32.20 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -3.41 Total: 11.40 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.21 Total: -10.47 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.53 Total: -43.09 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.38 Total: -9.05 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -26.89 -5.31 -32.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327531.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.705 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds