Wall clock time and date at job start Mon Mar 30 2020 02:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 113.38514 * 2 1 4 4 C 1.53515 * 114.16603 * 226.92166 * 2 1 3 5 5 N 1.47486 * 87.93048 * 220.32973 * 4 2 1 6 6 C 1.46898 * 110.99952 * 138.70741 * 5 4 2 7 7 C 1.50696 * 109.47016 * 169.99989 * 6 5 4 8 8 H 1.08002 * 120.00465 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00073 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00368 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99979 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46928 * 90.00069 * 11 9 7 13 13 H 1.48496 * 109.47407 * 209.99650 * 11 9 7 14 14 H 1.48503 * 109.46904 * 330.00317 * 11 9 7 15 15 C 1.47480 * 87.83684 * 27.00978 * 5 4 2 16 16 H 1.09002 * 109.47036 * 193.08065 * 1 2 3 17 17 H 1.09003 * 109.46838 * 313.07782 * 1 2 3 18 18 H 1.08999 * 109.47267 * 73.07671 * 1 2 3 19 19 H 0.96704 * 113.99649 * 46.91812 * 3 2 1 20 20 H 1.09005 * 113.47774 * 105.56422 * 4 2 1 21 21 H 1.08997 * 113.53532 * 335.10577 * 4 2 1 22 22 H 1.09001 * 109.47059 * 289.99916 * 6 5 4 23 23 H 1.09005 * 109.47423 * 49.99805 * 6 5 4 24 24 H 0.96994 * 120.00568 * 180.02562 * 10 9 7 25 25 H 1.09005 * 113.47310 * 87.75367 * 15 5 4 26 26 H 1.08990 * 113.48150 * 218.22188 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0972 1.3116 0.0000 4 6 2.1585 -0.9566 -1.0230 5 7 3.1618 -1.3060 -0.0001 6 6 3.4330 -2.7497 -0.0002 7 6 4.6263 -3.0367 0.8742 8 1 5.1324 -2.2276 1.3799 9 6 5.0714 -4.3324 1.0297 10 7 6.1131 -4.5829 1.7924 11 14 4.1948 -5.7322 0.1569 12 1 4.8090 -5.9447 -1.1784 13 1 4.3199 -6.9734 0.9624 14 1 2.7589 -5.3910 -0.0073 15 6 2.1586 -0.9566 1.0229 16 1 -0.3633 -1.0010 0.2326 17 1 -0.3633 0.7019 0.7507 18 1 -0.3634 0.2991 -0.9831 19 1 1.6994 1.9121 0.6453 20 1 2.5810 -0.4487 -1.8901 21 1 1.5097 -1.7885 -1.2968 22 1 2.5637 -3.2827 0.3850 23 1 3.6403 -3.0805 -1.0179 24 1 6.4265 -5.4943 1.9014 25 1 1.5090 -1.7884 1.2959 26 1 2.5810 -0.4488 1.8899 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084357614.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:05 Heat of formation + Delta-G solvation = -39.551950 kcal Electronic energy + Delta-G solvation = -10067.277057 eV Core-core repulsion = 8146.143225 eV Total energy + Delta-G solvation = -1921.133832 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.29591 -36.77442 -34.87290 -32.15115 -29.80269 -26.94854 -25.86816 -22.45754 -20.88499 -18.99106 -17.47743 -16.84220 -16.53478 -16.09613 -15.10419 -14.68076 -14.57870 -14.07852 -13.66302 -13.10566 -13.03887 -12.80457 -12.39411 -12.12056 -11.88203 -11.56511 -11.31408 -10.83107 -10.67144 -9.56461 -8.33054 -6.38407 1.31573 1.34543 1.45107 2.31105 2.96978 3.00140 3.31707 3.58559 3.83558 4.38159 4.39842 4.55701 4.59923 4.72065 4.78035 4.82663 4.94998 5.11525 5.23812 5.44301 5.71082 5.98261 6.55468 6.67173 6.94648 7.25215 8.84557 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.080601 B = 0.012264 C = 0.011399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.307067 B = 2282.519158 C = 2455.721346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.114 3.886 3 O -0.551 6.551 4 C -0.001 4.001 5 N -0.491 5.491 6 C 0.137 3.863 7 C -0.525 4.525 8 H 0.025 0.975 9 C 0.004 3.996 10 N -0.950 5.950 11 Si 0.957 3.043 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.245 1.245 15 C -0.023 4.023 16 H 0.074 0.926 17 H 0.083 0.917 18 H 0.078 0.922 19 H 0.394 0.606 20 H 0.080 0.920 21 H 0.091 0.909 22 H 0.010 0.990 23 H 0.025 0.975 24 H 0.269 0.731 25 H 0.077 0.923 26 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.791 5.988 -4.441 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.072 3.928 3 O -0.358 6.358 4 C -0.130 4.130 5 N -0.213 5.213 6 C 0.009 3.991 7 C -0.563 4.563 8 H 0.043 0.957 9 C -0.193 4.193 10 N -0.590 5.590 11 Si 0.779 3.221 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.169 1.169 15 C -0.152 4.152 16 H 0.093 0.907 17 H 0.102 0.898 18 H 0.097 0.903 19 H 0.244 0.756 20 H 0.098 0.902 21 H 0.109 0.891 22 H 0.028 0.972 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.623 5.883 -4.842 15.609 hybrid contribution -0.493 -0.989 0.497 1.212 sum -14.116 4.894 -4.345 15.559 Atomic orbital electron populations 1.22201 0.91053 1.04008 1.04093 1.22195 0.93162 0.82741 0.94687 1.86516 1.64760 1.21370 1.63194 1.24077 0.94197 0.97677 0.97044 1.68853 1.29612 1.17983 1.04852 1.20528 0.95354 0.87124 0.96085 1.21231 1.13359 0.93230 1.28488 0.95691 1.26009 0.95648 1.01845 0.95836 1.70067 1.26796 1.21529 1.40647 0.85580 0.80196 0.77590 0.78746 1.18940 1.20260 1.16886 1.24601 0.94098 0.99348 0.97195 0.90731 0.89774 0.90305 0.75559 0.90177 0.89066 0.97237 0.95655 0.92230 0.90468 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.53 71.98 0.69 -2.22 15 2 C 0.11 3.28 2.03 -10.45 -0.02 3.25 15 3 O -0.55 -16.05 13.56 -148.98 -2.02 -18.07 15 4 C 0.00 -0.04 7.11 83.58 0.59 0.56 15 5 N -0.49 -22.25 6.32 -932.73 -5.89 -28.14 15 6 C 0.14 6.89 3.64 85.56 0.31 7.20 15 7 C -0.52 -32.46 9.94 25.60 0.25 -32.20 15 8 H 0.02 1.75 8.06 -2.91 -0.02 1.73 15 9 C 0.00 0.22 5.47 84.66 0.46 0.68 15 10 N -0.95 -61.45 13.96 21.45 0.30 -61.16 15 11 Si 0.96 44.64 27.47 68.60 1.88 46.53 15 12 H -0.26 -11.85 7.11 99.48 0.71 -11.14 15 13 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 14 H -0.25 -10.43 6.54 99.48 0.65 -9.78 15 15 C -0.02 -0.85 7.13 83.58 0.60 -0.25 15 16 H 0.07 1.34 7.90 -2.39 -0.02 1.32 15 17 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 18 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 19 H 0.39 7.24 9.04 -74.05 -0.67 6.57 15 20 H 0.08 2.75 8.14 -2.38 -0.02 2.73 15 21 H 0.09 2.72 7.87 -2.39 -0.02 2.70 15 22 H 0.01 0.47 6.36 -2.39 -0.02 0.46 15 23 H 0.03 1.25 7.51 -2.38 -0.02 1.23 15 24 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 25 H 0.08 2.67 7.21 -2.38 -0.02 2.66 15 26 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -74.50 221.71 -2.41 -76.91 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.44 Total: 6.91 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.88 Total: -22.98 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -5.59 Total: -89.30 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -2.02 Total: -18.07 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -74.50 -2.41 -76.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084357614.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.357 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds