Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99668 * 2 1 4 4 H 1.48498 * 109.46845 * 270.00297 * 3 2 1 5 5 H 1.48494 * 109.47102 * 30.00198 * 3 2 1 6 6 H 1.48503 * 109.46987 * 150.00548 * 3 2 1 7 7 C 1.37878 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99394 * 359.97438 * 7 2 1 9 9 C 1.50689 * 120.00124 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47084 * 179.97438 * 9 7 2 11 11 C 1.46908 * 110.99875 * 180.02562 * 10 9 7 12 12 C 1.53777 * 113.61208 * 155.00128 * 11 10 9 13 13 C 1.53781 * 87.08184 * 140.06263 * 12 11 10 14 14 O 1.42905 * 113.61237 * 89.11276 * 13 12 11 15 15 C 1.53779 * 113.68901 * 252.53608 * 11 10 9 16 16 H 0.96997 * 120.00208 * 359.97438 * 1 2 3 17 17 H 1.09000 * 109.47644 * 60.00088 * 9 7 2 18 18 H 1.08997 * 109.47476 * 299.99783 * 9 7 2 19 19 H 1.00897 * 110.99887 * 303.94902 * 10 9 7 20 20 H 1.08999 * 112.84901 * 23.80071 * 11 10 9 21 21 H 1.09005 * 113.61435 * 25.51689 * 12 11 10 22 22 H 1.09003 * 113.61452 * 254.61124 * 12 11 10 23 23 H 1.08993 * 113.61848 * 219.93408 * 13 12 11 24 24 H 0.96705 * 113.99788 * 180.02562 * 14 13 12 25 25 H 1.09003 * 113.61721 * 105.45823 * 15 11 10 26 26 H 1.09005 * 113.61708 * 334.55922 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6180 -0.0009 12 6 6.0516 -3.9109 0.5946 13 6 7.1009 -3.8631 -0.5285 14 8 8.2723 -3.1196 -0.1862 15 6 6.0763 -3.0570 -1.3442 16 1 -0.4850 0.8400 0.0004 17 1 3.8753 -0.6803 0.8888 18 1 3.8746 -0.6799 -0.8911 19 1 3.6262 -3.0950 0.7807 20 1 5.9174 -1.7105 0.4044 21 1 5.3776 -4.7649 0.5264 22 1 6.4729 -3.7815 1.5916 23 1 7.3291 -4.8399 -0.9548 24 1 8.9359 -3.0855 -0.8888 25 1 6.5175 -2.2382 -1.9126 26 1 5.4091 -3.6776 -1.9425 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084444314.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -29.400079 kcal Electronic energy + Delta-G solvation = -9810.779432 eV Core-core repulsion = 7890.085819 eV Total energy + Delta-G solvation = -1920.693614 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.14263 -35.41679 -33.36079 -31.66959 -27.05543 -25.47727 -23.08787 -21.04936 -19.42388 -17.21223 -16.56359 -15.19018 -15.05622 -14.50940 -13.67679 -13.44424 -12.55048 -12.36261 -12.06931 -11.72303 -11.64007 -10.76745 -10.56004 -10.41986 -10.17568 -9.83944 -9.48784 -9.18946 -8.57659 -7.46276 -6.04655 -4.02493 3.30445 3.37253 3.40908 4.14597 4.43731 4.79693 4.97459 5.00351 5.19424 5.28721 5.55265 5.74699 5.94909 6.06035 6.24267 6.45918 6.52779 6.84805 7.05814 7.63704 7.66814 7.94633 8.36782 8.67111 9.03068 9.57669 11.08652 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.083027 B = 0.010460 C = 0.009728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.159915 B = 2676.316704 C = 2877.624145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.670 5.670 11 C 0.064 3.936 12 C -0.137 4.137 13 C 0.075 3.925 14 O -0.555 6.555 15 C -0.156 4.156 16 H 0.264 0.736 17 H -0.016 1.016 18 H 0.021 0.979 19 H 0.336 0.664 20 H 0.066 0.934 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.377 0.623 25 H 0.063 0.937 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 -5.482 -1.026 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.301 5.301 11 C -0.047 4.047 12 C -0.175 4.175 13 C 0.015 3.985 14 O -0.360 6.360 15 C -0.195 4.195 16 H 0.073 0.927 17 H 0.002 0.998 18 H 0.039 0.961 19 H 0.155 0.845 20 H 0.084 0.916 21 H 0.117 0.883 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.223 0.777 25 H 0.082 0.918 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.951 -5.340 -1.138 14.055 hybrid contribution 0.807 1.199 0.306 1.477 sum 13.758 -4.141 -0.831 14.392 Atomic orbital electron populations 1.69902 1.06157 1.26876 1.51089 1.24910 0.94751 0.98969 0.94708 0.86818 0.80275 0.83808 0.78606 1.20138 1.21182 1.19263 1.21086 0.89020 0.94811 1.50552 0.90304 1.20040 0.96529 0.85257 0.94696 1.60619 1.03808 1.16756 1.48878 1.22900 0.90004 0.96030 0.95719 1.23326 0.96491 0.99592 0.98106 1.22659 0.84819 0.93499 0.97521 1.86465 1.29500 1.75918 1.44100 1.23733 0.97820 1.00228 0.97713 0.92658 0.99814 0.96067 0.84547 0.91608 0.88308 0.91210 0.91679 0.77655 0.91812 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.36 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 15 7 C -0.52 -15.16 9.87 -34.45 -0.34 -15.50 15 8 H 0.08 2.49 8.06 -52.48 -0.42 2.06 15 9 C 0.16 4.12 4.35 -4.98 -0.02 4.10 15 10 N -0.67 -14.35 6.55 -107.13 -0.70 -15.05 15 11 C 0.06 1.15 4.07 -66.90 -0.27 0.88 15 12 C -0.14 -1.99 7.48 -25.92 -0.19 -2.18 15 13 C 0.07 0.97 5.28 -25.92 -0.14 0.83 15 14 O -0.55 -7.14 13.59 -35.23 -0.48 -7.62 15 15 C -0.16 -2.39 7.71 -25.92 -0.20 -2.59 15 16 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 17 H -0.02 -0.40 7.19 -51.93 -0.37 -0.78 15 18 H 0.02 0.55 7.57 -51.93 -0.39 0.15 15 19 H 0.34 6.90 8.54 -39.29 -0.34 6.57 15 20 H 0.07 1.28 7.86 -51.93 -0.41 0.87 15 21 H 0.10 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.38 3.00 9.12 45.56 0.42 3.41 15 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 223.91 15.07 3.37 3.37 Total: -1.00 -32.33 223.91 -5.76 -38.09 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.80 Total: 3.64 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.26 Total: -12.53 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.07 Total: -42.41 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.48 Total: -7.62 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.33 -5.76 -38.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444314.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.691 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds